Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00871 ATGTCAACTGATATTCAACACTCCTCGCATCATGTCTCAAGAATTTATGTTAATGAAAGCCGATTTGGCTTGTGTTTTAGAGTAGGCCAAGATGATACATCACCATCATCAGTATCATCTACTGCTGTGTCTATTTGCTTCAAAATCAGAAAGCATTACAGTTGGTACAGTACATTGGAGCGACAGCAACAACTGCAGCAGCCAATCTCGACCAATGATTTGATTTTTACCAATGTAGAACTCTTAGTGACAAGGCATGTCGTGTTGCTACGGGAATCTTTGCCATCCTTGTCTGCTGTAACACTGCTGACTCCAGAACTTGATTATCTGGGAATCCCCCAAGCTCTGCAAGCAATAGCTATACAGAAGATTGTCTCAGAAGCTGAAGCTAGCTCAGAGATTGTTGTCGATGCTTCTGAGCATACTCTCATTACAGTGACATGGACTTATGCTACAGCATATGCTAGTACTGAATATCAACCCTCCACCTCCAACATGATCATGAGCAAGGTCAATGGAGACTGTTGTTCTAGAGAAGTTGATCACGACGAGGAAGAGGAAGACATGGAAGATGACAAAGAAGAAGATGACGGGGACGACGATGAGACTTTTGTCAAAGAAGTAGAAGAGGAAATGAATGTTGAAGAACAACGAGATCTGCGACCGCTGCTACAACCGGGACATAACAACGGCGCCGAGGAGGACCCACTGCTTATCATAGTAGATGAGGAGCATGAGGGGGTGTGGGAACCTCCTGAAGCTACTTCACTGAGGATGTCTATAATACAGAGTGAAATAACTGGCAATAGGCTCCCAAGGGAACATTTACAAGCAGCCTTGACTTTGGTCTCAATTAACAGTATTCCACTCTCATCAGATAGCCAAGAGTTAGAGATTGAAGACTTAAGCGCAGACGAATCAATGGATAATCAGTACAATCGCAATGCAACATGCCCTTGTTTCATTCAGCAACTTGAAAAGATCAAACTAGATAATACTTATGATGTTGAATCAAAGGGACCATGTGCCATTTGTATGGACAAGTTTGAGATTGGGGTAGATGTTACTCGCTTACCATGCTTCCATATCTACCATAGAGACTGCATAGTCCACTGGCTGCAGAAAAGTCACAAGTGCCCTTTATGCCGTTTTCCCATGCCTCTTTCTAGGACCTAG 1176 0.4328 MSTDIQHSSHHVSRIYVNESRFGLCFRVGQDDTSPSSVSSTAVSICFKIRKHYSWYSTLERQQQLQQPISTNDLIFTNVELLVTRHVVLLRESLPSLSAVTLLTPELDYLGIPQALQAIAIQKIVSEAEASSEIVVDASEHTLITVTWTYATAYASTEYQPSTSNMIMSKVNGDCCSREVDHDEEEEDMEDDKEEDDGDDDETFVKEVEEEMNVEEQRDLRPLLQPGHNNGAEEDPLLIIVDEEHEGVWEPPEATSLRMSIIQSEITGNRLPREHLQAALTLVSINSIPLSSDSQELEIEDLSADESMDNQYNRNATCPCFIQQLEKIKLDNTYDVESKGPCAICMDKFEIGVDVTRLPCFHIYHRDCIVHWLQKSHKCPLCRFPMPLSRT* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00871 391 MobiDBLite consensus disorder prediction 180 201 - -
Pte3g00871 391 ProSiteProfiles Zinc finger RING-type profile. 342 383 IPR001841 -
Pte3g00871 391 Pfam Ring finger domain 342 383 IPR001841 -
Pte3g00871 391 CDD RING-H2_PA-TM-RING 341 383 - -
Pte3g00871 391 PANTHER SI:CH211-59O9.10 215 386 - -
Pte3g00871 391 SMART ring_2 342 382 IPR001841 -
Pte3g00871 391 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 388 IPR013083 -
Pte3g00871 391 MobiDBLite consensus disorder prediction 178 201 - -
Pte3g00871 391 SUPERFAMILY RING/U-box 341 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00871 Pte-Chr3 7165396 7166876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00871 341 391 C3H Transcription Factor Family AT2G44330 49.020 8.87e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00871 - - pper:18766796 98.2117