Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00852 ATGGCGAGATACCGCAGCCGTAGCAGAAGCTATAGCCCTCGCCGGCGTAGCAGGACTCCGCCACGTAGTCGTAAGCTTTACAACGATGACCGCCGTCGGGAAAGCAGGTCTCACAGAGACCGACGTTCGCCTCTTCCTTCTGGCTTGCTCGTTCGCAATCTCCCATTAGATGCTAGGCCAGAAGACCTTAGGGTGCCATTTGAGCGTTATGGTCCTGTGAAGGATGTCTATCTTCCAAAGAATTATTATACTGGTGAGCCTCGCGGCTTTGGATTTGTGAAGTTCCGTTATGGTGAAGATGCAGCTCAAGCAAAGCAAGAACTCAATCACACAATTATAGGTGGACGTGAAATAAGAATTGTGTTTGCTGAGGAAAACAGAAAAACTCCTCAGGAGATGCGAACTATCACTCGTGTGAGTGGTCGAAGCTCCAGAAGGAGAACTCCTACTAGATCCTCGAGGTCTCCAAGACGCCGATATCGCTCTTATTCTCGGTCAACTTCACCAACTGGACGTGATTCCAGGGACCGTAGGGGTAGGGATGAGCATCACACTCCTGAGAGATCTAGGTCTGTTTCTCGATCTGCTTCTCCTCATGACGAGAGGAAAACTGGAAGATCCCCTAGTACGAGGAAGAACCAGCATTCTCATGACAAGCGAGACTATACACCTAGCAGATCACCAACCCCTAGAGACAATGGACCTTCTCGTGAGAAGGATCATAGCCCTCCTAGATCACCAACTCCCAGGCGTAATGAACGCAGTCCACCTTCAGGGTCGCGATCAAGGTCTTACAGGTGA 801 0.5031 MARYRSRSRSYSPRRRSRTPPRSRKLYNDDRRRESRSHRDRRSPLPSGLLVRNLPLDARPEDLRVPFERYGPVKDVYLPKNYYTGEPRGFGFVKFRYGEDAAQAKQELNHTIIGGREIRIVFAEENRKTPQEMRTITRVSGRSSRRRTPTRSSRSPRRRYRSYSRSTSPTGRDSRDRRGRDEHHTPERSRSVSRSASPHDERKTGRSPSTRKNQHSHDKRDYTPSRSPTPRDNGPSREKDHSPPRSPTPRRNERSPPSGSRSRSYR* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00852 266 ProSitePatterns Protamine P1 signature. 2 12 IPR000221 GO:0000786|GO:0003677|GO:0005634|GO:0007283|GO:0035092
Pte3g00852 266 MobiDBLite consensus disorder prediction 1 47 - -
Pte3g00852 266 MobiDBLite consensus disorder prediction 170 248 - -
Pte3g00852 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Pte3g00852 266 SUPERFAMILY RNA-binding domain, RBD 49 149 IPR035979 GO:0003676
Pte3g00852 266 FunFam Serine/arginine-rich SC35-like splicing factor SCL28 2 139 - -
Pte3g00852 266 MobiDBLite consensus disorder prediction 1 21 - -
Pte3g00852 266 MobiDBLite consensus disorder prediction 22 45 - -
Pte3g00852 266 MobiDBLite consensus disorder prediction 124 266 - -
Pte3g00852 266 SMART rrm1_1 48 121 IPR000504 GO:0003723
Pte3g00852 266 MobiDBLite consensus disorder prediction 140 161 - -
Pte3g00852 266 MobiDBLite consensus disorder prediction 252 266 - -
Pte3g00852 266 Gene3D - 2 138 IPR012677 -
Pte3g00852 266 SMART rrm2_1 48 121 IPR003954 GO:0003676
Pte3g00852 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Pte3g00852 266 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 37 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00852 Pte-Chr3 6939905 6943743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00852 51 109 Eukaryotic Initiation Factors Gene Family AT3G11400 45.763 4.65e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00852 K12900 - zju:107423311 270.396