LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g00846	ATGAATCAGTATCATATTTACGAACCTATTGGTCGAGGCAAATACTCGACTGTTTATAAAGGTAGGAAGAAGAAGACAATCGAGTATTTTGCCATTAAAAGCATCGATAAGTCGCAGAAAAGCAAAGTTCTTCAAGAAGTGAAGATTCTTCACTCTTTAGATCACCCAAATGTACTGAAATTCTATTCTTGGTATGAAACCTCTGCTCACCTGTGGTTGGTTTTGGAATATTGCGTTGGCGGAAATCTCATGTCTTTACTGCAGCAGGATTGTCAACTTCCTGAAGATTCAATCCACGACTTTGCCCATGACCTTGTCAACGGTTTACAATTTTTACATTCAAATGGAACTATTTACTGTGATTTAAAACCGTCAAACATCCTGCTGGATGAAAATGGACGCATAAAGTTGTGTGATTTTGGATTAGCTCGAAAGCTGAGAGACATATCAAAAGTACCTTCTTCCTCGTTGCCTCAAGCAAAACGTGGAACACCCTGCTACATGGCTCCTGAGCTATTTGAAGATGGAGGCGTTCATTCTTATGCTTCTGATTTTTGGGCCCTAGGTTGCGTTCTATATGAATGTTACGCTGGAAGGCCTCCCTTCGTAGGAAGAGAGTTTACTCAGCTGGTAAAATCCATAATTTCAGATCCAACTCCATCCCTTCCTGGCAACCCAAGTCGTCCTTTTGTCAACTTAATCAATTCTCTATTGATAAAAGATCCTGCTGAAAGATTGAGGTGGCCTGAGCTCTGTCGACATGCTTTCTGGCGAACAAAACTCACTCCAATTACTCTGCCAGCACAGCCAGCCTTCGAGGATATGATAGAACAATATGCTAAGCCATATCTATCAGAACTTAATGTTGATAGACCTGCCCAGAACAAGACTCCCACCAAATATCGTGAAAAAGATGTGAGAGGTGGTTCCAAGCAAGATGAGAATTCTATATGTGGATTGAGAGGCCAAGAAACACCTATCAAGGGCACACCAAATGGACGTCGACCACAAACTAAGGGATCTGGAAGAATAGTAGAAGAAAAGCGGAAAGATCATTCTAATGCAAGCCGGGCTGTAAACCTTTTACGGCTCTCACGAATAGCAAAATCAAATTTGCAGAAGGAGAATGAGAAGGAAAATTACCGTCGCCCCTTACCTAATGGTTCTGAGAATAATTCTGAAGTTAAATTAGAGAACACTGACATGGAACTTGATTTTAATGAGAATGAAGAAGATGATGGGAATGACGACACTGATGGTTCTGAACATGCCACTTCTGACTATAAATCATCATCAATTCCTAATCAGCATGAAGTGAAAGGAGACGAAGCAGAAAACGAAACTAGCCAATCAGATACACAGTCTGCTCATGCTTCAGATGATTCAAGATCAGTTGAAATGGAGTCAACTCCTGAGCATTTTGACATATCTGCTAACTCACCTAATGTTAGTCCTCTGCTAAAGAAACATAGACATGCAGAAGATTCAAGATCAACCCCTGAATCTGATCCTCGGTCCTCTACCAGTATCGCACAGGTTCTTTGGCATCCTTCTGATCTTGCAGTTAGACCTGTAATGCCAGGCAGAAAGGTTGACAAATTGTCTGAAGTCGTTCCTTCACTTCCTTTTGAGGCTCTTCAAGCTTCTGATTTTGTGAAAATATCTAAGCAGCAATTGGATATGCTCAATAATCGTATAATAACAACTATTACTGGGAGTGCAAGTAACGGTGAGAAACAAAATGTAATTAGATATCTAGAAATGTTGAGCAGCAATTCGGAAGCTGCTAATGTTTTAACCAATGGGCCAATAATGCCAATTCTTGTCAAAATGCTTCGGCAGTCCAAGGCTTCAGCTTTGCGTGTTCAGCTTACTTCTCTGATTGGTTTGCTGATCCGACATTCAACTTTCGTTGACGACAATTTGGCAAATTCTGGAATTTTAGGCTCCCTAGTTGATGGACTTAGGGACAAACAGGAAAAAGTCAGAAGGTTTTCTATGGCTGCATTAGGTGAGCTGCTATTCTACATATCCACTCAAAATGAGGAAAGCAAGGATAATTCACTGGAATCACCATCAAAGGATACTAGAACTGCATCTGGCTGGCAGATTCCAAATTCAATTATAAGTTTTATCTCATCAATTCTGAGGAAGGGCGAGGATGATATCACACAATTATATGCATTGAGGACAGTTGAAAATATTTGCAGTCAAGGTGGTTCATGGGGATGCCGCTTTAATTGTCAAGATGTAATAAGTAATCTATGCTACATTTATAGAGCATCTGGTAAACAAGAGAGCATGAGGCTCACCGCAGGGTCTTGCTTAGTTCGCCTGGTTCGTTTCAACCCTCCTAGCATTCAGTCAGTCATGGATAAGCTTTCTTTCAAAGAGCTTGCATCTGCTTTGCAGAAGGGAAGTCCAAGAGAGCAGCAAATTGGCTTAAACCTTCTAAACATGGCCTTGCTTGGGAACCATGCGCTTACAAATGCAAGCAGGCACACTCTACCATTGGCCGAGGATAAGAATCTTGTAGCAAATCTTTTGTGCCTAGTTGAGCAGGGGAGTGAAATTCTGAAGGGAAAGGCACTAGTCCTTATAGCTCTTCTTTCTAAAAATGGTAGGAGATGGCTTCCTCACTTCTTTTGCAACGCGAAGTTACTTTCTGTGGTGGATAGGCTGGGAAAAGAGAAAGATGCATACGTGAGACATTGTTTAGAGGCACTTGTGCATGTCGTGGCATCTACAATTCCTAATTTATTGGACAACATAGCAGTAGATGTTCAGCATATGATAGGAGGAAGGCGCCATGGGCATATTTCTACCATGACAAGCAGAAGTGCTTCAAAATCCAACGTCCATTTATTTCCGGTTGTTCTGCATCTTCTTGGCAGTTCATCTTTTAAGCAGAAGTTGGTGACTCTGCAGGTTTTGCAGCAGTTGGCGACTATAATCAAGCTCATGGAGACACCATTTCAGGGAAGGGATGATCTCCAAATAACTCTTCTTCGTGTTCTCGAGTCAATCACAGAAGAGCCGCCGGTGATTGTTGAGAGGCATGTCATTTTTATTCATGAAGTTCTCCCCAGTTTGACTGTTCTTTATAAAGGAAACAAGGATGGGGATGCCAGATTCTTATGCCTTAAGATTTTATTTGATGTAATGGTCATTCTTTTGAATGAACCGTTGGGTGATGAACAGAGATCAAAGGATCTCAAGTTCATCTCCAATATGTATTTCCTCCCTCTATACCCCACCTTCATTGAAGATGAGCATGTAATTCCAATATACGCTCAGAAGCTTCTTGTGATGCTTATTGAGTTCAACCATATCCAAATTGCCGACGTTCTGCAACTGAAGACCGTTTCCCAATGTTTTGAGTTCTTGCTTGGTGATCTTTCACATGCAAATGTCAATAACGTCAAACTATGTTTGGCCCTGGCATCCGCTCCAGAAATGGATCCAAACATACTTTCTCAACTGAAAGTGGTTAGGAAAATCGGCAACCTGTTGGAGTTTATATATGCAAAGGATATGGAAGAGTTTCTGGAACCAACTCTTGGACTGTGTAGGGCTTTCCTTCTTTGTTCAATCAACTTCAGACAGGGCATCTACTCTAATGAACCAGATCTCTTGCGAGATCCTTCTGAGCCAAGCAATGTAGTTGATCACCTGCAATGCATAAGAGATATTGCAGATTTTGGCGGCAATTTAGGCGTCTTTCTGGAGTTAAGTGGGACTGCTGAAGCCAATACTTCCGATATAGCTTCAGAATGTGTTGTGTTGTTGCTGAAGGCAGCTCCAAGGGAAGCTAGTGCTGGTCTACTCACTAATCTTCCAAAGGTCTCTGTGATCCTTGCATCTTGGCGTAAGGGCACCTCTTGCTTGTTGGTCGAGAGAATGCTTCATGCGTTAGGTTATGCTTGCAGGGAGTACTTGTTGCAGCGCATGATATTGTCCATATCCATAACCGAGATTTCAAGAATTGAAGTGACTGTTTCTGAACTCAAGAATTCGGATGTGCCCAGTTTAGCCAATTCTGCATCGTTGGCCGCAATGGAGCTGCAGCGGCTTCCTCGCTGTTTTTGA	4089	0.4194	MNQYHIYEPIGRGKYSTVYKGRKKKTIEYFAIKSIDKSQKSKVLQEVKILHSLDHPNVLKFYSWYETSAHLWLVLEYCVGGNLMSLLQQDCQLPEDSIHDFAHDLVNGLQFLHSNGTIYCDLKPSNILLDENGRIKLCDFGLARKLRDISKVPSSSLPQAKRGTPCYMAPELFEDGGVHSYASDFWALGCVLYECYAGRPPFVGREFTQLVKSIISDPTPSLPGNPSRPFVNLINSLLIKDPAERLRWPELCRHAFWRTKLTPITLPAQPAFEDMIEQYAKPYLSELNVDRPAQNKTPTKYREKDVRGGSKQDENSICGLRGQETPIKGTPNGRRPQTKGSGRIVEEKRKDHSNASRAVNLLRLSRIAKSNLQKENEKENYRRPLPNGSENNSEVKLENTDMELDFNENEEDDGNDDTDGSEHATSDYKSSSIPNQHEVKGDEAENETSQSDTQSAHASDDSRSVEMESTPEHFDISANSPNVSPLLKKHRHAEDSRSTPESDPRSSTSIAQVLWHPSDLAVRPVMPGRKVDKLSEVVPSLPFEALQASDFVKISKQQLDMLNNRIITTITGSASNGEKQNVIRYLEMLSSNSEAANVLTNGPIMPILVKMLRQSKASALRVQLTSLIGLLIRHSTFVDDNLANSGILGSLVDGLRDKQEKVRRFSMAALGELLFYISTQNEESKDNSLESPSKDTRTASGWQIPNSIISFISSILRKGEDDITQLYALRTVENICSQGGSWGCRFNCQDVISNLCYIYRASGKQESMRLTAGSCLVRLVRFNPPSIQSVMDKLSFKELASALQKGSPREQQIGLNLLNMALLGNHALTNASRHTLPLAEDKNLVANLLCLVEQGSEILKGKALVLIALLSKNGRRWLPHFFCNAKLLSVVDRLGKEKDAYVRHCLEALVHVVASTIPNLLDNIAVDVQHMIGGRRHGHISTMTSRSASKSNVHLFPVVLHLLGSSSFKQKLVTLQVLQQLATIIKLMETPFQGRDDLQITLLRVLESITEEPPVIVERHVIFIHEVLPSLTVLYKGNKDGDARFLCLKILFDVMVILLNEPLGDEQRSKDLKFISNMYFLPLYPTFIEDEHVIPIYAQKLLVMLIEFNHIQIADVLQLKTVSQCFEFLLGDLSHANVNNVKLCLALASAPEMDPNILSQLKVVRKIGNLLEFIYAKDMEEFLEPTLGLCRAFLLCSINFRQGIYSNEPDLLRDPSEPSNVVDHLQCIRDIADFGGNLGVFLELSGTAEANTSDIASECVVLLLKAAPREASAGLLTNLPKVSVILASWRKGTSCLLVERMLHALGYACREYLLQRMILSISITEISRIEVTVSELKNSDVPSLANSASLAAMELQRLPRCF*	1363

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte3g00846	1362	SUPERFAMILY	ARM repeat	561	1052	IPR016024	-
	Pte3g00846	1362	MobiDBLite	consensus disorder prediction	289	509	-	-
	Pte3g00846	1362	PANTHER	SERINE/THREONINE-KINASE ULK4-LIKE PROTEIN-RELATED	1	1359	IPR044591	GO:0000911\|GO:0000914\|GO:0008017
	Pte3g00846	1362	Pfam	Protein kinase domain	4	256	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte3g00846	1362	Gene3D	-	564	915	IPR011989	-
	Pte3g00846	1362	MobiDBLite	consensus disorder prediction	370	384	-	-
	Pte3g00846	1362	CDD	STKc_ULK4	3	257	-	-
	Pte3g00846	1362	MobiDBLite	consensus disorder prediction	296	311	-	-
	Pte3g00846	1362	SUPERFAMILY	Protein kinase-like (PK-like)	1	258	IPR011009	-
	Pte3g00846	1362	ProSitePatterns	Protein kinases ATP-binding region signature.	10	33	IPR017441	GO:0005524
	Pte3g00846	1362	MobiDBLite	consensus disorder prediction	340	356	-	-
	Pte3g00846	1362	MobiDBLite	consensus disorder prediction	487	501	-	-
	Pte3g00846	1362	FunFam	Aurora kinase A	1	81	-	-
	Pte3g00846	1362	Gene3D	Transferase(Phosphotransferase) domain 1	1	313	-	-
	Pte3g00846	1362	MobiDBLite	consensus disorder prediction	404	418	-	-
	Pte3g00846	1362	SMART	serkin_6	4	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte3g00846	1362	ProSiteProfiles	Protein kinase domain profile.	4	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g00846	Pte-Chr3	6864239	6870749	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte3g00846	1	246	AGC Kinase Gene Family	AT1G45160	34.783	1.19e-38	155

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	ULK_ULK4	Pte3g00846		Pkinase	9e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g00846	K17545		-	qsa:O6P43_021688	2035