Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00839 ATGACTATCATCAAGAGCATAATTCACAGGTCTCGCAGGGTGGTTCAGGATAATGGTTCCGTAGAAGTGGTTACTGACGGATTGAAGCAAAGTTCTTGGGCTAACATGCCTCAAGAACTGCTTAGAGAAGTGTTGATGAGGATCGAGGCCTCTGAGAGCAGTTGGCCCCCACGAAAGAGTGTGGTGGCTTGTGCTGGTGTTTGCCGGAGTTGGAGAGAGAGGACCAGAGAGATTGTTAAGCCGCCTGAGGTTTCTGCTAAGATAACATTTCCTATCTCTGTGAAGCAGCCTGGTCCTAGGGAACATCTAATGCAGTGCTTCATTAAGCGCAACCGCTCCACCCAGACATATTTTCTCTTCCTAAGTTTGACTAATGCATTAGCTGATGATGGGAAATTCCTTCTTGCTGCAAGAAAGTGTAGACGCCCCACCTGCACAGATTATGTCATCTCTTTAGATATCGATGACATGTCAAGAGGGAGCAGCACCTACATAGGGAAACTGAGATCAAATTTTCTTGGGACCAAGTTCACTGTATATGATGCGCAGCCACCTCATGTTGGAGCCAAGATGACCAAAAGCCGGTCCACGAGACTGGTGAACTTGAAACAAGTTTCACCTAGGCTACCTACTGGTAACTATTCGGTGGCACACATATCATATGAATTAAATGTGCTAGGTTCCAGGGGGCCTAGGAGAATGCACTGTGTTATTGATTCAATTCCTGCCTCTGCAATTGAACCTGGAGGTGTTGCGCCTACGCAGACTGAGTTTTCTGTTAGTGACATGGATACTCTCCCATCCTTTCCCTTTTTCAGATCAAGGTCTAACCGCACGGAAAGCTTCTCATCAGGACCTTTGGGTTTGACAGAGAGATTGCTCTTGTTAAGAAATAAGGCTCCCAGGTGGCATGAGCAGCTGCAATGTTGGTGCTTAAATTTTCATGGACGTGTGACAGTGGCTTCAGTTAAAAATTTCCAGCTGGTTGCCTCCCCAGAAAATGGACCAGCTGGTGCGGAGCATGACAAGATCATTCTCCAGTTTGGCAAAGTCGGGAAGGATTTATTTACAATGGATTACAGATATCCAATCTCCGCATTTCAGGCCTTTGCAATATGCCTCAGTAGCTTTGATACAAAAATTGCTTGTGAATAA 1155 0.4589 MTIIKSIIHRSRRVVQDNGSVEVVTDGLKQSSWANMPQELLREVLMRIEASESSWPPRKSVVACAGVCRSWRERTREIVKPPEVSAKITFPISVKQPGPREHLMQCFIKRNRSTQTYFLFLSLTNALADDGKFLLAARKCRRPTCTDYVISLDIDDMSRGSSTYIGKLRSNFLGTKFTVYDAQPPHVGAKMTKSRSTRLVNLKQVSPRLPTGNYSVAHISYELNVLGSRGPRRMHCVIDSIPASAIEPGGVAPTQTEFSVSDMDTLPSFPFFRSRSNRTESFSSGPLGLTERLLLLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGAEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00839 384 ProSitePatterns Tub family signature 2. 369 384 IPR018066 -
Pte3g00839 384 PRINTS Tubby superfamily signature 341 360 IPR000007 -
Pte3g00839 384 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Pte3g00839 384 PRINTS Tubby superfamily signature 362 384 IPR000007 -
Pte3g00839 384 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Pte3g00839 384 PRINTS Tubby superfamily signature 164 188 IPR000007 -
Pte3g00839 384 PRINTS Tubby superfamily signature 148 164 IPR000007 -
Pte3g00839 384 PRINTS Tubby superfamily signature 213 240 IPR000007 -
Pte3g00839 384 SUPERFAMILY F-box domain 26 75 IPR036047 GO:0005515
Pte3g00839 384 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Pte3g00839 384 Gene3D Tubby Protein; Chain A 90 384 IPR025659 -
Pte3g00839 384 Pfam F-box domain 33 78 IPR001810 GO:0005515
Pte3g00839 384 Pfam Tub family 94 379 IPR000007 -
Pte3g00839 384 CDD F-box_AtTLP-like 33 77 - -
Pte3g00839 384 PANTHER TUBBY-RELATED 22 382 - -
Pte3g00839 384 FunFam Tubby-like F-box protein 90 384 - -
Pte3g00839 384 SUPERFAMILY Tubby C-terminal domain-like 82 384 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00839 Pte-Chr3 6828465 6831539 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00839 10 385 TUB Transcription Factor Family AT2G47900 72.895 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte3g00839 Tub 2.1e-112 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00839 K19600 - gmx:100778346 636.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00839 3 6828465 6831539 Pte3g00839 3 6828465 6831539 RCT