Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00820 ATGGAACGGGGCGGTCGGGCTAGTGAGGATACGCAGTCCGATCCGTCTCCGGAATGGACTGGTAAGGGAAGCGAAACAGGGTTAGAGGAGCCTATGTGGCGATTTGGATTGGGTGGTGGAGAAGCCTACCCGGAGCGCCCGGACGAGGCTGATTGCTTGCACTATCTCAAGACTGGATATTGTGGATACGGCTCGCGATGTCGCTTCAATCATCCACGTGACCGAGCTGCGGTTATTGGAGCTGGGAGGACTAGTGGTGGGGAGTACCCGGAGCGAGTTGGCCAGCCTGTTTGCCAGTACTACATGCGAACTGGAATGTGTAGATTTGGTGCTTCTTGTAAATACGATCACCCTAAGCAAGGAGGAGTAGGAGCAGACTCTCTAAGCCCCACATTTAATTATTATGGATTTCCATTACGAATGGGTGAGAAAGAGTGTTCCTACTATGTGAAAACAGGAGACTGCAAGTTTGGGGCAACATGTAAATTCCACCATCCGCAGCCTGCTGGGATTCAGGTTCCTGCAACATTACAAGTTCCTTCTGGGCCAGAGATGCCGGTGTCTGCCGCAGCACCTGCGATGTATCGAACTCTGCAGTCTCCATCTCTTCCTTCATCGCAACAGTATGGACTAATGGTTGCAAGGCCTCCTGTCATACAAGGATCGTTTGTCCAAAGCCCCTATGCTTCTCTCGTATTTTCTCCTGTGCCACTTACAGGATGGAGTCCTTATATGCCTCCTGTTAGTCCTGTGGTTCCTCCTGGTTCTCAGTCTAATATTGCTTCGACGCCGCATTACGGCTTTCCGCAGATGCCTTCTTCATTACCTGCATATGCTATACCTTATCAAAGCTCACCTTCCCCAGTTGGTCCTTCAAGCAGTAGCCAGAAAGAGATTCCATTTCCTGAGAGGCCTGGCCAACCGGAATGTCAATATTACATGAAAACTGGGGATTGTAAGTATGGACCCTCATGTAGATATCACCATCCTCCTGAAGTGAGTGCACTGCAGACAAATGTTCACCTCAGTCCCATGGGTCTTCCTTTGCGCCCGGGTGCTGCGAAATGCACTCATTATGCCCAGCGTGGAGTATGCAAGTATGGTCTAGCATGCAAATTTGACCACCCCATGGGAACGCTAAGCTACTGTCCTTCTGCATCATCCCTTACCGATATGCCAGTTGCACCATTGTCTGTTGGGTACTCTATTGGCATTCTTGCTCCATCATCCTCATCGTCTGAGCTGCGGCCTGAACTTATATCAGGATCCAGCAATGAATCCCTCCCAGTTAGAATGCCTTCATCTATGATATCTTCTACTGAATCTGTTGGATTGTCCCTTTCAGTCGGTGGGACTGTGTGTCACTCAACTGATCAACCAGCAACTAAGGGTTCTAATCCCTAG 1404 0.4986 MERGGRASEDTQSDPSPEWTGKGSETGLEEPMWRFGLGGGEAYPERPDEADCLHYLKTGYCGYGSRCRFNHPRDRAAVIGAGRTSGGEYPERVGQPVCQYYMRTGMCRFGASCKYDHPKQGGVGADSLSPTFNYYGFPLRMGEKECSYYVKTGDCKFGATCKFHHPQPAGIQVPATLQVPSGPEMPVSAAAPAMYRTLQSPSLPSSQQYGLMVARPPVIQGSFVQSPYASLVFSPVPLTGWSPYMPPVSPVVPPGSQSNIASTPHYGFPQMPSSLPAYAIPYQSSPSPVGPSSSSQKEIPFPERPGQPECQYYMKTGDCKYGPSCRYHHPPEVSALQTNVHLSPMGLPLRPGAAKCTHYAQRGVCKYGLACKFDHPMGTLSYCPSASSLTDMPVAPLSVGYSIGILAPSSSSSELRPELISGSSNESLPVRMPSSMISSTESVGLSLSVGGTVCHSTDQPATKGSNP* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00820 467 SUPERFAMILY CCCH zinc finger 49 75 IPR036855 GO:0046872
Pte3g00820 467 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872
Pte3g00820 467 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Pte3g00820 467 PANTHER PROTEIN PHOSPHATASE RELATED 38 408 - -
Pte3g00820 467 SUPERFAMILY CCCH zinc finger 95 119 IPR036855 GO:0046872
Pte3g00820 467 MobiDBLite consensus disorder prediction 1 34 - -
Pte3g00820 467 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Pte3g00820 467 Gene3D - 126 173 - -
Pte3g00820 467 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Pte3g00820 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872
Pte3g00820 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 142 167 IPR000571 GO:0046872
Pte3g00820 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Pte3g00820 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 377 IPR000571 GO:0046872
Pte3g00820 467 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Pte3g00820 467 SUPERFAMILY CCCH zinc finger 353 380 IPR036855 GO:0046872
Pte3g00820 467 SUPERFAMILY CCCH zinc finger 141 168 IPR036855 GO:0046872
Pte3g00820 467 Gene3D - 41 121 - -
Pte3g00820 467 Gene3D - 303 388 - -
Pte3g00820 467 SMART c3hfinal6 92 119 IPR000571 GO:0046872
Pte3g00820 467 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Pte3g00820 467 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Pte3g00820 467 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Pte3g00820 467 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Pte3g00820 467 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Pte3g00820 467 SUPERFAMILY CCCH zinc finger 308 331 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00820 Pte-Chr3 6630934 6636367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00820 1 465 C2H2 Transcription Factor Family AT5G18550 54.298 1.28e-149 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte3g00820 zf-CCCH 1.4e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00820 - - qsa:O6P43_003530 649.047