Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00813 ATGGATTCTGCAAGGAATGCTGGTGCTGTAGCTGGGACGGTGCTAATTCCAGTGCGGTTTGTATGGCCATATGGAGGAAGAAGTGTATATCTTAGCGGCTCTTTCAGAAGGTGGTCCGAGCTTCTGCCAATGTCGCCTGTGGAGGGTTGTCCAACTGTATTCCAAGTCATATACAGCTTGGCGCCTGGGATGCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGTCACGATGAACAGCAACCTTATGTAACTGGGGAGTATGGGATAGTTAATACAGTCTACTTGACCACCGATGCTAACTATATTCCAGTCATTCAAGATTTAGCTTCTGGTTCTAAAATGGATGTTGATAATGAGACATCTCGGCAAGTGGTCCATCTGATAGATGGTATGCTGAGCGAAGTGGCACCTAGAGTTTCAGATACTGACCTGCAGACCTCCCGACAACATATTTCTACTTTCTTGTCTTCACACACTGCCTATGAGTTGCTTCCTGAGTCGGGGAAGGTTGTGGCCTTGGATATTGATCTTCCTGTGAAGCAAGCATTTCATATATTGCATGAGCAGGGAGTACCCATGGCTCCTCTTTGGGACTTTTGTAAAGGCCAGTTTGTTGGAGTTCTCAGTGCCCTAGATTTTATTTTAATTTTAAGAGAGCTTGGGAATGATGGGTCAAATCTTACTGAAGAAGAGCTGGAAACACATACAATATCAGCTTGGAAGCAGGGAAAAGCATATCTGAACAGACAAAATGCAAATGGAAGAGCTTCATCGAGACTTCTTATCCATGCAGGACCATATGATAATTTGAAGGATATTGCTTTGAAGATCTTGCAAAATGAGGTTTCAGCTGTACCCATCACCCATTCAACCTCTGAAGATGGTTCATACCCGCAGCTTCTACATCTTGCTACACTGTCTGGAGTATTGAAGTGTATCTGCCGGTATTTCAAGCATTGTACTAGTTCGTTGCCCATACTACAGCTTCCAATTTATGCAATTCCTGTGGGCACCTGGGTTCCCAAAATTGGAGACTCAAACCGACGGCCTTTAGCAATGCTAAAACCGAGTGCCTCTCTTAGTTCAGCCTTAAATTTATTAGTTCAAGCCCGAGTAAGTTCAGTACCAATAGTAGATGATAACGACTCACTACTTGACATTTATTGTCGAAGTGATATAACAGCTTTGGCCAAGGACAGAGCCTATACACATATTAATCTTGATGAAATGTCCGTACATCAGGCTTTGCAGCTAGGTCAAGACTCATATTCTAACTACGAGATGAGAAGTCAAAGGTGTCAGATGTGCTTGCGCTCTGATTCTTTACACAAAGTGATGGAGCGGTTGGCATCCCCCGGTGTGTCTCTGTTTGTATATACATTATGGAATCTCTCTCCTCATCTATGGCCTGGGTGTTGTTTCTATTTTCCTTTTGACTTGCATCACAATCTACTTGTTTTTGAGTTGCATGTCCCTTCCTGA 1485 0.4337 MDSARNAGAVAGTVLIPVRFVWPYGGRSVYLSGSFRRWSELLPMSPVEGCPTVFQVIYSLAPGMHQYKFFVDGEWRHDEQQPYVTGEYGIVNTVYLTTDANYIPVIQDLASGSKMDVDNETSRQVVHLIDGMLSEVAPRVSDTDLQTSRQHISTFLSSHTAYELLPESGKVVALDIDLPVKQAFHILHEQGVPMAPLWDFCKGQFVGVLSALDFILILRELGNDGSNLTEEELETHTISAWKQGKAYLNRQNANGRASSRLLIHAGPYDNLKDIALKILQNEVSAVPITHSTSEDGSYPQLLHLATLSGVLKCICRYFKHCTSSLPILQLPIYAIPVGTWVPKIGDSNRRPLAMLKPSASLSSALNLLVQARVSSVPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMSVHQALQLGQDSYSNYEMRSQRCQMCLRSDSLHKVMERLASPGVSLFVYTLWNLSPHLWPGCCFYFPFDLHHNLLVFELHVPS* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00813 494 CDD E_set_AMPKbeta_like_N 17 94 - -
Pte3g00813 494 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 145 459 - -
Pte3g00813 494 SUPERFAMILY CBS-domain pair 150 320 IPR046342 -
Pte3g00813 494 Pfam Glycogen recognition site of AMP-activated protein kinase 16 97 IPR032640 -
Pte3g00813 494 SUPERFAMILY E set domains 16 96 IPR014756 -
Pte3g00813 494 FunFam Sucrose nonfermenting 4-like protein 13 98 - -
Pte3g00813 494 Pfam CBS domain 349 395 IPR000644 -
Pte3g00813 494 SMART cbs_1 351 399 IPR000644 -
Pte3g00813 494 SMART cbs_1 170 219 IPR000644 -
Pte3g00813 494 ProSiteProfiles CBS domain profile. 347 404 IPR000644 -
Pte3g00813 494 Gene3D Immunoglobulins 16 109 IPR013783 -
Pte3g00813 494 ProSiteProfiles CBS domain profile. 164 225 IPR000644 -
Pte3g00813 494 SUPERFAMILY CBS-domain pair 344 455 IPR046342 -
Pte3g00813 494 Gene3D - 140 323 IPR046342 -
Pte3g00813 494 Gene3D - 331 461 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00813 Pte-Chr3 6580552 6586560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00813 8 107 Protein tyrosine phosphatase (PTP) family AT3G01510 32.039 2.57e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00813 - - gmx:100785692 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00813 3 6580552 6586560 Pte3g00813 3 6580552 6586560 RCT