Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00809 ATGGCTGACTCGAACGCTGGTGCAAGTGGTTCCAATAATGAAGATGCAGGTTTCAAGGAACAAGATCGGTTTCTGCCAATCGCGAATGTCGGCCGGATCATGAAGCAAATCCTGCCATCTAATGCTAAAATATCAAAGGAGGCCAAGGAAACAATGCAAGAATGTGTGTCTGAGTTCATAAGCTTTGTTACGAGCGAGGCATCAGAAAAGTGCAGGAAGGAAAGGCGGAAGACTGTGAATGGAGACGACATCACCTGGTCCATGGGAGCTCTTGGCTTTGATGATTATGTGGAGCCATTAAGAAGGTACTTGAGCAGATATCGAGAGCTAGAAGTAGATAGAGCAGCTAGTCAAGAAAGGCCGACTAGTTCCGATCCAAAAGATGAAGAACCATCCTCCTATGGCAACTCAGGTAAAGGAGCAATTTGA 429 0.4592 MADSNAGASGSNNEDAGFKEQDRFLPIANVGRIMKQILPSNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDITWSMGALGFDDYVEPLRRYLSRYRELEVDRAASQERPTSSDPKDEEPSSYGNSGKGAI* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00809 142 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Pte3g00809 142 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Pte3g00809 142 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Pte3g00809 142 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 120 IPR027113 GO:0001228|GO:0006355|GO:0016602
Pte3g00809 142 MobiDBLite consensus disorder prediction 111 127 - -
Pte3g00809 142 MobiDBLite consensus disorder prediction 1 15 - -
Pte3g00809 142 MobiDBLite consensus disorder prediction 111 142 - -
Pte3g00809 142 MobiDBLite consensus disorder prediction 1 20 - -
Pte3g00809 142 FunFam Nuclear transcription factor Y subunit B-3 13 137 - -
Pte3g00809 142 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Pte3g00809 142 SUPERFAMILY Histone-fold 21 130 IPR009072 GO:0046982
Pte3g00809 142 Coils Coil 100 120 - -
Pte3g00809 142 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Pte3g00809 142 Gene3D Histone, subunit A 11 137 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00809 Pte-Chr3 6547146 6547750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00809 14 111 CCAAT-HAP3 Transcription Factor Family AT2G47810 76.531 2.69e-53 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Pte3g00809 CBFD_NFYB_HMF 2.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00809 K08065 - rcu:8262421 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00809 3 6547146 6547750 Pte3g00809 3 6547146 6547750 RCT