Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00798 ATGTTATCTTTTCGGAACAAGGTTGGAAAGTACTGGAAGCATAGTTTGCTCGCAATAAATCAAAAGATGCAGAACGAAGAAGGACAAATTACCGAGCTATATATCCCAAGGAAATGCTCTGCCACAAATAGGTTGATCACTGCTAAGGATCATGCTTCTGTCCAGATCAACATTGGTCATTTGGATGAAAATGGTCTTTACACAAACCAATTTTCAACATTTGCTCTCTGTGGTTTCATCAGAGCCCAGGGTGATGCTGACAGTGCATTAGACCGGTTGTGGCAGAAGAAGAAAGCCGAGATCCATCAGTAA 312 0.4167 MLSFRNKVGKYWKHSLLAINQKMQNEEGQITELYIPRKCSATNRLITAKDHASVQINIGHLDENGLYTNQFSTFALCGFIRAQGDADSALDRLWQKKKAEIHQ* 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00798 103 PANTHER 40S RIBOSOMAL PROTEIN S21 23 100 IPR001931 GO:0003735|GO:0005840|GO:0006412
Pte3g00798 103 FunFam 40S ribosomal protein S21 23 103 - -
Pte3g00798 103 ProSitePatterns Ribosomal protein S21e signature. 33 41 IPR018279 GO:0003735|GO:0005840|GO:0006412
Pte3g00798 103 Pfam Ribosomal protein S21e 23 98 IPR001931 GO:0003735|GO:0005840|GO:0006412
Pte3g00798 103 Gene3D - 18 102 IPR038579 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00798 Pte-Chr3 6486305 6488807 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00798 23 103 Cytoplasmic Ribosomal Protein Gene Family AT5G27700 85.185 2.30e-51 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00798 K02971 - qsa:O6P43_021738 163.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00798 3 6486305 6488807 Pte3g00798 3 6486305 6488807 RCT