Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00730 ATGTCAGAGCAGACGAAATTCGGCGTTCTCTGCAGCCTCTTCACATGGATGCAAAGAAGCAAGTCTTCAGCTAAGAAGCGTTCCAAGTTCCGAAAGTTCCTCGACACTTTCTGTAAACCCAGTGACTATTTCAGCGCTATTCGTCTCATTCTTCCAAACCTTGATCGTGAACGAGGCACATATGGACTCAAGGAGTCGTCTCTCTCGAACTGCCTCATCGATGCACTCGGCATGTCGAAGGAGTCAGAGGACGCTCATCGTCTTATCAATTGGCGTAAGGGTGGTCCTAAGACTGGTGCTTTTGCTGGAAACTATGCTCTTGTTGCAGCTGAGGTGCTGCAGCGAAGACAAGGTGCAACTTCTGGTGGACTAACTATTAAGGAACTAAATGAACTGCTTGATAAGTTGGCATCAAGTGAAAGCAGAGTAGAGAAGACTTCAGTTCTTGGAACCCTCATCCAGAAGACAAATGCACAAGAAATGAAATGGATTGTCATGATAATCCTCAAAGATCTGAAGCTTGGAATTAGTGAAAAGAGCATATTTCATGAATTTCACCCGGATGCGGAGGACTTATTCAATGTCACATGTGATTTGAAACTAGTATGTGAAAAACTGAGGGACCGTAATCAACGTCATAAGCGTCAGGACATTGAAGTTGGAAAGGCTGTGCGCCCACAACTAGCCATGAGAGTTTCTGATGCATCGGCTGCATGGAAAAAGCTTCATGGAAAGGAGGTGGTTGTAGAGTGCAAATTTGATGGGGATCGCATCCAAATTCATAAAAATGGGAACGAGATACACTTTTTCTCAAGGCAGGTGCACATGAATTTTCTTGACCACTCAGAATATGAGCACGCAGTCTCAGGTCTTATAATACAAAATGTTGTTCCTGATAGGTGTATACTTGATGGAGAGATGTTGGTCTGGGACACATCTTTGAACCGCTTTGCCGAGTTTGGTTCAAATCAGGAGATAGCCAAGGCAGCAAAAGATGGACTTGACAGTGATCGCCAGTGGCTAGACGTTGCCTTTGATATCCTTTATGTCGGAGATACTAGTGTAATTCATCAGAGCTTGAATGAACGGCATGAGCTTCTCCGTAAAGTTGTGAAGCCCTGTAAGGGGCGTTTGGAGATTTTAGTACCTAACACTGGTCTCAATACTCATCGTACACCTGGGGAACCTTGTTGGTCACTTGTTGCTCACAGCATGGATGACATTGAGAGATTTTTCAAAGAAACTATAGAAAACAGGGATGAAGGCATTGTCATTAAAGATCTTGCTTCAAAATGGGAACCCGGCGATCGCAGTGGAAAGTGGTTGAAATTGAAGCCCGAGTATATACGTGCTGGGTCTGATTTAGATTGTCTTATAATAGGAGGCTATTATGGATCTGGACGCCGTGGAGGGGAGGTTGCTCAATTCTTGGTGGGCCTTTCTGAGCGTCCTGACACAAATACATATCCTAGGAGATTTATCTCCTTTTGTAGAGTTGGTACTGGACTCTCAGATGACGAACTTGATGCTTTAGTCAGAAAACTGAAGCCCTACTTCAGAAAATATGATTACTCAAAGAAGGCACCTCCGAGTTATTATCAAGTAACAAACAATTCTAAAGAAAGACCGGATGTCTGGGTTGATAGCCCTGAGAAATCTGTAATTCTTTCCATCAACAGTGATATTAGAACCATAAACTCAGAGGTATTTGCAGCACCTTATAGTCTGAGATTTCCTCGTATTGAAAGAGTGAGATATGACAAACCTTGGTACGAATGCCTTGATGTGCAATCATTTTTAGAACTTGTGCAGTCCAGTAATGGCACCACACAGAGGGGAACAGATTATATTGGCACCCAAGATAACAAGCGTAGCCATGTGAAATCCTCCAGAAGCAAAGATAAAAGAAACATATCTGTTCTTCCTTCACATTTAGTTCATACTGATATTTCCAATGTCAAGGGGGACTCTCAAATCTTTTCAGACATGGTGTTCTACATTGTTAATGTGCCTCCAACCTGTTCTATTGATTCCTTGCACAAGATAGTTGCTGAAAATGGGGGAACTTTCTCCATGAATCTAAATAGCTCTGTTACCCATTGTGTTGCAGCAGATACCAAGGGTTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCACTATTCTTGGGTAATGGATTGCTCCTCCCAAAAAAAGCTTGTGACCTTACAGCCAAAGTATTTCCTTCACCTCTCAGTACCGACGAAGAAGAAGCTGCAAGAAGAAGTTGATGAGTTTTCTGATTCTTACTACTGTGATATTGACCTTTCTGACCTAAAACAGCTCCTAAACAATATATCCCAATCAGATGATGTTCCCGTTGTTAACCAATACAGGAAAAAATACTGCCCAAAGAACAAATGGTGTCAATTTCATGACTGCTGCATATATTTTCGCATTTTAGGAGAATCTGTCAAACGTGAATGGAGAATTCTTTTGGAATTTGTGGTACGGAGATTGAAGCTTGAAGTTCTCATGGGTGGGGGAAAAATTACTGAGAGTCTTACTCATGCTACGCATTTGGTGATCCTGTCTGCACCTGCGAACATTGTGAACTTTGAGAATGTTCTGAGAAGTTTCACATCAGAAGAGAAAAGGTTCTTGCACAGCAAGAGGGTGCATGTGGTTCGGTCTCAGTGGTTAGAAGATTGCTTGGCAGAGGATAAAAGACTGCCAGAAGAAAGATACAGTTTGAAGCCCATTTCAAGGGAAGAGTCAAACACTGAGAAGAATGACTCGGCTTTAGAAGTTTCTCCAGGTGTAGAAAATTTGGGAAATGAGAAGATATCACGGTCACCAAACATAATTAGAGACCAGAGAGTAAAAGCTTTGGCGAATCAGGACCCTAAACTTATTTCATCCCCCAGAGGTACAAAAAGGAGTAGAGGGCGACCTGCTGCTAGAGGCTCTAAAAGGTCAAAGTCTGTTGCCAATCAAGTCAGGAGAACACGAACACAGTTCTCCCGTAAACCTGCTAAAATATCTGAATGTCAGACAGATGAAAGTGGTTCTCACGATGAAAGAACCTCGTATGAAGAGGTTGTAAAAGAGAAAGGGAACCCAGCAAAACGTCCTGAAGTTCAAGAGATGGAAAAGAAATTAGATTCTGATCTGTTGAATAAGAACAAGGTAGATGCTCAGGTTCCCATGAATATTGAACTTGAAAAACAGCAGATCTCTGAAGTTGAAATGTTTGATAAGCATGATATCAACAGTGAAAAACATGGGCAAATGGGAGGAATAGATGATCCAGTTCAGGCTATGTTATTTAACATGATTCCCAGTCTTGGGAGAACGAAAGTAGAGGGAAAAGAGAACCTTTGTAGTGGAGGGGAAGCTAACATGATTCCTAGCCTTGGAAAAACGAAAGTAGACGAGGAAGAGAATTGTAGTAGTGAAGGGGAAGTCCTACCTGCAGAGCCGACGGTAACGGTTGCGAAGAAGAAGAAATTTTGCCGTTGGTTATATGCTGTTATTCATACACTTGATGTTCCCCTTCGCGTGGCTCGACAAGTTGGTCCATACTGTTTAAGGAGATTCACGATTATGAGGAGATATTCTCTAGTTTTCTGA 3618 0.4221 MSEQTKFGVLCSLFTWMQRSKSSAKKRSKFRKFLDTFCKPSDYFSAIRLILPNLDRERGTYGLKESSLSNCLIDALGMSKESEDAHRLINWRKGGPKTGAFAGNYALVAAEVLQRRQGATSGGLTIKELNELLDKLASSESRVEKTSVLGTLIQKTNAQEMKWIVMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAMRVSDASAAWKKLHGKEVVVECKFDGDRIQIHKNGNEIHFFSRQVHMNFLDHSEYEHAVSGLIIQNVVPDRCILDGEMLVWDTSLNRFAEFGSNQEIAKAAKDGLDSDRQWLDVAFDILYVGDTSVIHQSLNERHELLRKVVKPCKGRLEILVPNTGLNTHRTPGEPCWSLVAHSMDDIERFFKETIENRDEGIVIKDLASKWEPGDRSGKWLKLKPEYIRAGSDLDCLIIGGYYGSGRRGGEVAQFLVGLSERPDTNTYPRRFISFCRVGTGLSDDELDALVRKLKPYFRKYDYSKKAPPSYYQVTNNSKERPDVWVDSPEKSVILSINSDIRTINSEVFAAPYSLRFPRIERVRYDKPWYECLDVQSFLELVQSSNGTTQRGTDYIGTQDNKRSHVKSSRSKDKRNISVLPSHLVHTDISNVKGDSQIFSDMVFYIVNVPPTCSIDSLHKIVAENGGTFSMNLNSSVTHCVAADTKGFKFEAAKRHGDIIHYSWVMDCSSQKKLVTLQPKYFLHLSVPTKKKLQEEVDEFSDSYYCDIDLSDLKQLLNNISQSDDVPVVNQYRKKYCPKNKWCQFHDCCIYFRILGESVKREWRILLEFVVRRLKLEVLMGGGKITESLTHATHLVILSAPANIVNFENVLRSFTSEEKRFLHSKRVHVVRSQWLEDCLAEDKRLPEERYSLKPISREESNTEKNDSALEVSPGVENLGNEKISRSPNIIRDQRVKALANQDPKLISSPRGTKRSRGRPAARGSKRSKSVANQVRRTRTQFSRKPAKISECQTDESGSHDERTSYEEVVKEKGNPAKRPEVQEMEKKLDSDLLNKNKVDAQVPMNIELEKQQISEVEMFDKHDINSEKHGQMGGIDDPVQAMLFNMIPSLGRTKVEGKENLCSGGEANMIPSLGKTKVDEEENCSSEGEVLPAEPTVTVAKKKKFCRWLYAVIHTLDVPLRVARQVGPYCLRRFTIMRRYSLVF* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00730 1205 Pfam ATP dependent DNA ligase C terminal region 469 588 IPR012309 GO:0003910|GO:0006281|GO:0006310
Pte3g00730 1205 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 3 209 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pte3g00730 1205 NCBIfam ATP-dependent DNA ligase 61 603 IPR000977 GO:0003910|GO:0005524|GO:0071897
Pte3g00730 1205 MobiDBLite consensus disorder prediction 987 1008 - -
Pte3g00730 1205 Gene3D - 1 218 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pte3g00730 1205 Pfam BRCT domain, a BRCA1 C-terminus domain 657 740 IPR001357 -
Pte3g00730 1205 ProSitePatterns ATP-dependent DNA ligase signature 2. 421 445 IPR016059 GO:0003909
Pte3g00730 1205 Pfam DNA ligase N terminus 7 186 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Pte3g00730 1205 Pfam DNA ligase IV 750 782 IPR021536 GO:0003910
Pte3g00730 1205 Pfam ATP dependent DNA ligase domain 226 445 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pte3g00730 1205 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 250 258 IPR016059 GO:0003909
Pte3g00730 1205 SUPERFAMILY BRCT domain 659 745 IPR036420 -
Pte3g00730 1205 FunFam DNA ligase 670 784 - -
Pte3g00730 1205 Gene3D DNA ligase/mRNA capping enzyme 220 447 - -
Pte3g00730 1205 MobiDBLite consensus disorder prediction 619 635 - -
Pte3g00730 1205 CDD BRCT_DNA_ligase_IV_rpt1 659 745 - -
Pte3g00730 1205 PANTHER DNA LIGASE 4 2 1139 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Pte3g00730 1205 MobiDBLite consensus disorder prediction 608 635 - -
Pte3g00730 1205 SUPERFAMILY BRCT domain 786 915 IPR036420 -
Pte3g00730 1205 ProSiteProfiles BRCT domain profile. 655 743 IPR001357 -
Pte3g00730 1205 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 185 446 - -
Pte3g00730 1205 CDD OBF_DNA_ligase_IV 452 596 - -
Pte3g00730 1205 Gene3D BRCT domain 670 784 IPR036420 -
Pte3g00730 1205 SUPERFAMILY Nucleic acid-binding proteins 453 604 IPR012340 -
Pte3g00730 1205 FunFam DNA ligase 448 609 - -
Pte3g00730 1205 Gene3D - 449 609 IPR012340 -
Pte3g00730 1205 MobiDBLite consensus disorder prediction 1009 1041 - -
Pte3g00730 1205 Gene3D BRCT domain 801 913 IPR036420 -
Pte3g00730 1205 Coils Coil 126 146 - -
Pte3g00730 1205 ProSiteProfiles BRCT domain profile. 843 913 IPR001357 -
Pte3g00730 1205 SMART BRCT_7 657 733 IPR001357 -
Pte3g00730 1205 SMART BRCT_7 814 903 IPR001357 -
Pte3g00730 1205 ProSiteProfiles ATP-dependent DNA ligase family profile. 344 482 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Pte3g00730 1205 MobiDBLite consensus disorder prediction 916 1041 - -
Pte3g00730 1205 CDD Adenylation_DNA_ligase_IV 214 449 IPR044125 GO:0005524
Pte3g00730 1205 FunFam DNA ligase 1 218 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00730 214 605 Core DNA Replication Machinery Family AT1G08130 26.733 1.71e-27 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00730 K10777 - fve:101303509 1530.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00730 3 5798056 5813156 Pte3g00730 3 5798056 5813156 RCT