Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00728 ATGGATAACATTGGTTCTGAGTACAACCATTACTGGGAAACCAACATGTTCCTTCAATCTGAAGAGCTTGATAGCTGGGGTTTGGATGAAGCGTTCTCCAGTTACTACGATTCGAGTTCACCTGACGGTGCGGCGTCTTCCTCTCCGGCATCGAAGAACATAGAATCAGAGAGGAACAGGAGGAGGAAGCTCAACGAGAGACTCTTTGCTCTTAGAGCAGTGGTCCCCAAAATCAGCAAGATGGATAAGGCTTCCATAATTAAAGATGCCATTGACTACATCCAGGAGCTGCATGAACAAGAAAGAAGGATTCAAGCTGAGATAATGGAGCTTGAGTCTGGGAATTTGAAGAAGAATCTGAGCTATGAGTTTGACCAAGAGCTTCCTGCTTTACTCAAGACTACCAAGAAGAAGAAGAAGACTGAGAAGTTCTATGGTTCTGGGTGCTCTAGAAGTTCCCCTATTGAAGTCCACGAGATGAGGGTGACATCCATGGGAAACAGGATCGTGGTGGTGAGCTTGACATGCAGTAAAAGAACAGACACAATGGTGAAACTGTGCCAAGTGTTTGAATCTTTGAAGCTAAAGATCATCACAGCCAACATCACAACTTTTTCAGGGAGGCTTTTGAAGACAGTCTTCATTGAGGCAGATGAAGATGAGAAAGAAAATCTGCAGATCAGAATCAGAGCAGCCATTGAAGCTCTTAATGATCCTCAAAGTCCAATGAGCATTTGA 738 0.4404 MDNIGSEYNHYWETNMFLQSEELDSWGLDEAFSSYYDSSSPDGAASSSPASKNIESERNRRRKLNERLFALRAVVPKISKMDKASIIKDAIDYIQELHEQERRIQAEIMELESGNLKKNLSYEFDQELPALLKTTKKKKKTEKFYGSGCSRSSPIEVHEMRVTSMGNRIVVVSLTCSKRTDTMVKLCQVFESLKLKIITANITTFSGRLLKTVFIEADEDEKENLQIRIRAAIEALNDPQSPMSI* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00728 245 SUPERFAMILY ACT-like 167 236 IPR045865 -
Pte3g00728 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 113 IPR036638 GO:0046983
Pte3g00728 245 Gene3D - 44 115 IPR036638 GO:0046983
Pte3g00728 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 115 - -
Pte3g00728 245 SMART finulus 54 103 IPR011598 GO:0046983
Pte3g00728 245 MobiDBLite consensus disorder prediction 39 53 - -
Pte3g00728 245 Pfam Helix-loop-helix DNA-binding domain 53 97 IPR011598 GO:0046983
Pte3g00728 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Pte3g00728 245 MobiDBLite consensus disorder prediction 39 59 - -
Pte3g00728 245 Coils Coil 94 114 - -
Pte3g00728 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 38 234 - -
Pte3g00728 245 Coils Coil 215 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00728 Pte-Chr3 5782974 5786931 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00728 2 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.644 2.54e-81 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g00728 HLH 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00728 - - zju:107421731 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00728 3 5782974 5786931 Pte3g00728 3 5782974 5786931 RCT