Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00703 ATGGACAGCGTCTTCCTACTTGCTGATGGGGATAGAGCCTTTTTTCTGCAATCGATAATGATGCAACCATTTGCTGGCACTTACATTTGCCTCTGGGAGTATAATCCTCGGCCATTGAATTGCTTGGTCTACAAGGATGGTTTCTTTGATGGAGATAACAGTCAAGCAAGCAGTTCCATGGGAAACAGTGGAGCTCACAGGTCATTCAATGAATACACTAGAACTCCAATACCCATTGTTGTAAATGATGATCGCATCCCCGGGTTAGCTATGAAGAAAAATCGTCCTTACTTAGAACTTAGAGAGTTGGATCTTATTACAAAGGCCTCAAGTGACATACAAAGACAATTCTATCAGGAAATTGGAATCAAGACTGTAGTTTTCATGGGATGCAACCATGGAGAAATTGAGATTGGGTTTTCCATCATACCACCTCAGGCTGATATCCAAACTGCTTTGAGGAATTTGTTTCCGGATGACTTTTCTAAGCTTAGCCAACCACTTAAACAGAATCCACCTTCATCTTCGTCATCTTCATTGAGAACATTGTCCACCATGGGTAGCCCTGAATACTCACCTCTCTTATTCAACATTCCAACCACTACTCAAATTCCAGAAGCATTTAGTTTGCAGCAAATGCCAACCACAACTAGTACTAACCAACAAGCCATTCATGCATTTGCTCAACTTCGTAACATCCAGTTCCCCAGCCTGGAAACTGAAGAGGCTGTAATGACGAGAGCTCTACTCGCTGTTTTCTCTTCATCTTCTTCAACTTCAACTTCAACTTCTCAACCAATAACACCATTTCAAAGCTTACCTAATTACAACACTCAAAGGGTAATATCAGAAGCTAGTGCTTTCAAGAATTATAGACAAGGTTTAGGTCGTAGGGCATCAGTAATGAGATCTACCATTGGTGGGCAAAGCAAGATGAAGAGAGCAATTGCATTCTTCAGAAACTTGAATTTAAGGAGACTTCAGGAACGTATGCAATCAAGTAGATACAACACTACTCAACTGCACCATATGATATCAGAAAGAAGAAGGCGGGAGAAGCTAAATGAGAACTTCCAGGCATTGAGAGAATTACTTCCTCCAGGAACAAAGAAAGATAAAGCTTCAATATTGACTTCAGCAAAGGAGAATTTGAGCTATTTGATGGGTCATATTGAAGAGCTAAGCAAGAGAAATGAGCAGCTAGAGGCACGGCTCTTGCCTGCATCCAGTAAAGAAGCAGAAACAAGTTCCTTAAATGAAAGACTTGCTGTTAGAATTTCACATGGAGCTGAATCAACCTCAGAGGCTAGATTCATCGACTTGCAAGTGACATTAAGAGCAATTTGCTCTCAAGTTGATTTGTTGATCTGCATATTGGAATTCTTAAAGCACGATCAGAATGTAAATCTAATTTCAATTGATGCCAATACCCGATTAGAAGAATCAACTCCTGTGAACCATGTAACCTTGAGATTAAGCATTGAGGGGAGCGATTGGGAGGAGTATGCCTTCCAGGAAGCAATCAGGAGAGTGCTTTCTGACTTGGAACAATGA 1554 0.4086 MDSVFLLADGDRAFFLQSIMMQPFAGTYICLWEYNPRPLNCLVYKDGFFDGDNSQASSSMGNSGAHRSFNEYTRTPIPIVVNDDRIPGLAMKKNRPYLELRELDLITKASSDIQRQFYQEIGIKTVVFMGCNHGEIEIGFSIIPPQADIQTALRNLFPDDFSKLSQPLKQNPPSSSSSSLRTLSTMGSPEYSPLLFNIPTTTQIPEAFSLQQMPTTTSTNQQAIHAFAQLRNIQFPSLETEEAVMTRALLAVFSSSSSTSTSTSQPITPFQSLPNYNTQRVISEASAFKNYRQGLGRRASVMRSTIGGQSKMKRAIAFFRNLNLRRLQERMQSSRYNTTQLHHMISERRRREKLNENFQALRELLPPGTKKDKASILTSAKENLSYLMGHIEELSKRNEQLEARLLPASSKEAETSSLNERLAVRISHGAESTSEARFIDLQVTLRAICSQVDLLICILEFLKHDQNVNLISIDANTRLEESTPVNHVTLRLSIEGSDWEEYAFQEAIRRVLSDLEQ* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00703 517 Coils Coil 384 411 - -
Pte3g00703 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 387 IPR011598 GO:0046983
Pte3g00703 517 CDD bHLH_AtbHLH_like 343 402 IPR045239 -
Pte3g00703 517 Pfam Helix-loop-helix DNA-binding domain 342 387 IPR011598 GO:0046983
Pte3g00703 517 MobiDBLite consensus disorder prediction 164 185 - -
Pte3g00703 517 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 109 514 IPR044658 -
Pte3g00703 517 SMART finulus 344 393 IPR011598 GO:0046983
Pte3g00703 517 Coils Coil 344 364 - -
Pte3g00703 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 406 IPR036638 GO:0046983
Pte3g00703 517 Gene3D - 323 410 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00703 Pte-Chr3 5556569 5559832 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00703 1 518 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 40.984 8.47e-98 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g00703 HLH 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00703 - - cave:132166497 480.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00703 3 5556569 5559832 Pte3g00703 3 5556569 5559832 RCT