Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte3g00690 | ATGGTTTGGTTTCAATGTGAGGATTGTGGCGACAACCTCAAAAAGCCCAAGTTGCCAAGTCACTTCAGGACTTGCTCTGCTCGAAAGCTATCATGCATTGATTGTGGGGAAATGTTTGGGCGTGACACTGTCCAAGACCACCAACAATGTATCTCAGAAGCGGAAAAATATGGTCCTAAAGGCCAAGTTAAACCCACAAGTGCGACACCTAAAAAGGATAAGAAGCTAGAGAATGTTGATGTCAATGTGGGGTTATCTCAAAGGCCTCCTTGGTTTTGTAGCCTGTGCAACACAACAGTTACCAGCAAGCAGACTCTTCTTCTCCATGCTGAGGGAAAGAAACACATAGCAAAAGCTAAAGCACATTCTGCAAAGCAGCAGTCTGTACAAGCAGACAAATGCGATGCAGATGAAAAGCTTCATGCTGATAACACTCCTAAGGTCGATCTACCTGATAACAAATTTGTGGAGCAACCAAATTTTGAAGAACCGTCCAAAGCCAAAACTGTACTTGGTGAATTGGATACTGATAAGGGAGCTCTTACATCAAATAGAAAGAGGAAACACAATGCATTGGAGAATGGCTCCCATACCAACAAAAGAAAGGATGATATTTTGGATGCTGAAGGAAATGGTGAAGTAATTCAGTGTCAAAAGGCTGAAATGAAGGAAACAAAAACACAAAGGGTTGGGATATCCACATCCATCAGTGGTGTAGAAAAAGGAATCAAGTGGAAGAAACTGATCAAATCAGCCCTTAAATCTCAAGCTGATGGGGTTTTGAAGATGAAGAAACTAAAAAAACTTGTCCTCAAAGCTATCCGGGAATCTGGCATCACGGAAGATGACACACTGCTTGGCAATGTGCTTGAACAAAAGATCCAATCGAGCTCCAAATTTTCTCTAGACAAAAAATATGTGCGGCTGGTGGCCAAAGATTGA | 942 | 0.4204 | MVWFQCEDCGDNLKKPKLPSHFRTCSARKLSCIDCGEMFGRDTVQDHQQCISEAEKYGPKGQVKPTSATPKKDKKLENVDVNVGLSQRPPWFCSLCNTTVTSKQTLLLHAEGKKHIAKAKAHSAKQQSVQADKCDADEKLHADNTPKVDLPDNKFVEQPNFEEPSKAKTVLGELDTDKGALTSNRKRKHNALENGSHTNKRKDDILDAEGNGEVIQCQKAEMKETKTQRVGISTSISGVEKGIKWKKLIKSALKSQADGVLKMKKLKKLVLKAIRESGITEDDTLLGNVLEQKIQSSSKFSLDKKYVRLVAKD* | 314 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte3g00690 | 313 | Gene3D | Classic Zinc Finger | 68 | 123 | - | - | |
| Pte3g00690 | 313 | SUPERFAMILY | beta-beta-alpha zinc fingers | 1 | 26 | IPR036236 | - | |
| Pte3g00690 | 313 | MobiDBLite | consensus disorder prediction | 179 | 204 | - | - | |
| Pte3g00690 | 313 | Gene3D | - | 1 | 50 | - | - | |
| Pte3g00690 | 313 | SUPERFAMILY | beta-beta-alpha zinc fingers | 30 | 58 | IPR036236 | - | |
| Pte3g00690 | 313 | Pfam | Zinc-finger of C2H2 type | 91 | 115 | - | - | |
| Pte3g00690 | 313 | SMART | ZnF_U1_5 | 88 | 122 | IPR003604 | GO:0003676|GO:0008270 | |
| Pte3g00690 | 313 | Pfam | LYAR-type C2HC zinc finger | 30 | 57 | IPR014898 | - | |
| Pte3g00690 | 313 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 27 | 51 | - | - | |
| Pte3g00690 | 313 | PANTHER | CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR | 1 | 310 | IPR039999 | GO:0003677 | |
| Pte3g00690 | 313 | SUPERFAMILY | beta-beta-alpha zinc fingers | 83 | 126 | IPR036236 | - | |
| Pte3g00690 | 313 | ProSiteProfiles | Zinc finger C2HC LYAR-type profile. | 1 | 26 | - | - | |
| Pte3g00690 | 313 | FunFam | cell growth-regulating nucleolar protein-like | 1 | 50 | - | - | |
| Pte3g00690 | 313 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 93 | 115 | IPR013087 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte3g00690 | 1 | 150 | C2H2 Transcription Factor Family | AT2G19380 | 46.667 | 1.04e-37 | 139 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte3g00690 | K15263 | - | qsa:O6P43_022444 | 342.428 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pte3g00690 | 3 | 5474103 | 5477629 | Pte3g00690 | 3 | 5474103 | 5477629 | RCT |