Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00686 ATGGACGGAGTAGGCCAGTACAGCCCTCGGACAGTCGAGGAGGTTTTCAGAGATTTTAAGGGTCGTCGAGCCGCCATGATCAAAGCTCTCACCGCTGATGTCGAAGAATTTTTTCAACAGTGCGATCCTGAGAAGGAAAATCTTTGCCTTTATGGATTTCCCAATGAGCAATGGGAAGTGAACTTACCTGCTGAAGAAGTTCCTCCAGAGCTTCCAGAGCCTGCACTAGGCATAAATTTTGCTAGAGATGGGATGCAAGAAAGAGACTGGCTATCTCTTGTTGCTGTGCACAGTGATGCCTGGTTGCTTGCTGTGGCTTTCTATTTTGGGGCACGATTTGGGTTTGATAAGGCTGACAGGAAACGCCTCTTCACTATGATTAATGATCTTCCTACAATATTTGAGATTGTGACTGGATCTGCAAAGAAACAGTCAAAGGAGAAGTCATCAGTTTCAAACCACAGCATCAACAAAGTGAAATCTGGTTCAAAAGGGCGAGGATCTGACTCTGGAAAACATTCCAAGAGCTCACAAGTGGAAGACGATGAAGAGGGATTAGATGAAGAAGATGATGAAGATCATGGGGATACCTTGTGCGGAGCATGTGGGGAGCACTACGCTGCTGATGAATTCTGGATTTGTTGTGACGTATGTGAAAAATGGTTTCACGGAAAGTGTGTGAAGATCACACCTGCTAGGGCTGAGCACATAAAACAGTACAAGTGCCCCTCGTGCAGCAACAAGAGAGCTCGGACTTGA 759 0.4598 MDGVGQYSPRTVEEVFRDFKGRRAAMIKALTADVEEFFQQCDPEKENLCLYGFPNEQWEVNLPAEEVPPELPEPALGINFARDGMQERDWLSLVAVHSDAWLLAVAFYFGARFGFDKADRKRLFTMINDLPTIFEIVTGSAKKQSKEKSSVSNHSINKVKSGSKGRGSDSGKHSKSSQVEDDEEGLDEEDDEDHGDTLCGACGEHYAADEFWICCDVCEKWFHGKCVKITPARAEHIKQYKCPSCSNKRART* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00686 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 189 247 IPR013083 -
Pte3g00686 252 MobiDBLite consensus disorder prediction 145 164 - -
Pte3g00686 252 CDD PHD_AL_plant 198 248 IPR044104 -
Pte3g00686 252 SUPERFAMILY FYVE/PHD zinc finger 188 249 IPR011011 -
Pte3g00686 252 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Pte3g00686 252 Pfam PHD-finger 199 248 IPR019787 -
Pte3g00686 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Pte3g00686 252 FunFam PHD finger alfin-like protein 191 247 - -
Pte3g00686 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Pte3g00686 252 PANTHER CPG BINDING PROTEIN 8 251 IPR045104 GO:0006355|GO:0042393
Pte3g00686 252 MobiDBLite consensus disorder prediction 145 192 - -
Pte3g00686 252 MobiDBLite consensus disorder prediction 165 180 - -
Pte3g00686 252 SMART PHD_3 198 246 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00686 Pte-Chr3 5427450 5430373 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00686 3 253 Alfin-like Transcription Factor Family AT3G42790 74.502 7.32e-125 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pte3g00686 Alfin 7.9e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00686 K26274 - rcu:8272513 444.506