Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00678 ATGGCGACTCAGATGAGCAAGAAGAGAAAGTTCGTTGCTGATGGAGTTTTCTTCGCTGAGCTGAACGAGGTTCTTACCAGAGAGCTTGCTGAAGATGGTTATTCTGGAGTTGAGGTCAGAGTTACTCCAATGCGTACTGAAATCATCATCAGAGCCACAAGAACCCAAAACGTCCTTGGTGAAAAGGGTAGGAGGATTAGAGAGCTTACTTCTGCGGTACAAAAGAGATTTAAGTTCCCTGAGGGTAGTGTGGAGCTTTTTGCTGAGAAAGTCAATAACAGGGGTCTTTGTGCTATTGCTCAGGCAGAGTCCCTCCGTTACAAGCTGCTTGGTGGGCTTGCTGTAAGAAGGGCTTGCTATGGTGTTCTGAGATTTGTGATGGAAAGTGGTGCCAAGGGTTGTGAGGTGATTGTTAGTGGGAAGTTGAGAGCACAGCGTGCTAAATCTATGAAGTTCAAGGATGGTTACATGATTTCTTCCGGTCAACCTGTGAATGAATACATTGACTCTGCAGTGAGACATGTTCTTTTGAGACAGGGTGTGCTTGGTATCAAGGTGAAGATCATGCTTGATTGGGATCCTAAAGGCAAACAAGGCCCCAAAACACCCCTCCCTGATCTTGTCACTATCCACCCTCCTAAGGATGAGGAAACCTATATTCTTCCTCCCATCGCTGCCGTTCCAACTGAAATTGAGGTCCCTGTTGCTTAA 711 0.4627 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSAVQKRFKFPEGSVELFAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVNEYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDLVTIHPPKDEETYILPPIAAVPTEIEVPVA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00678 236 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Pte3g00678 236 CDD KH-II_40S_S3 5 95 - -
Pte3g00678 236 Gene3D - 1 91 IPR015946 -
Pte3g00678 236 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Pte3g00678 236 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Pte3g00678 236 Pfam KH domain 20 93 IPR004044 GO:0003723
Pte3g00678 236 Gene3D - 93 219 IPR036419 -
Pte3g00678 236 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Pte3g00678 236 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Pte3g00678 236 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Pte3g00678 236 FunFam 40S ribosomal protein S3 1 92 - -
Pte3g00678 236 FunFam 40S ribosomal protein S3 93 227 - -
Pte3g00678 236 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00678 Pte-Chr3 5387992 5391377 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00678 1 231 Cytoplasmic Ribosomal Protein Gene Family AT2G31610 88.312 4.77e-151 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00678 K02985 - dct:110106767 436.802