Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00676 ATGGGAAGAAGTCCCTCTTGTTCTAAGGAGGGCTTGAAGCGAGGTGCTTGGACAGCATATGAAGACAAAATTCTTACTGAATACATTGCTGTCCATGGAGAAGGCAGATGGAGAACCCTCCCCAAAAGAGCAGGCTTGCAAAGATGTGGTAAAAGTTGCAGACTGAGGTGGTTGAATTATCTGAGGCCAGATATCAAGAGAGGTAATATTTCTCCGGATGAAGAAGAGCTTATCATTAGGCTTCACAAGCTATTAGGAAACAGGTGGTCTCTAATAGCTGGTAGGCTTCCAGGAAGAACAGACAATGAAATAAAGAACTACTGGAACACAAACTTAGGCAAGAAAGTTCAAGATGGACATCAGACTTCTGCTTCACATGGTAAAGGTGCATCTGCTCCATCCAAGGAGAACAATCAACACAAGTCTGAAGCCTCAAACTGCAACATGGAAGTTTCAACATCACCTATCTCCAATGTTGTCTACACAAAGGCAATCAAGTCAACCAATTTCTTCGTCAGCCCACAGCAGACATCAACAGTAATGTTTAAGGAGTCATACAATTCAGAGTTGCCACTGGCGAAACTTACTAATCTTTCAGCCACATCAATGGCTAATGCTGTGGAATCCAATGTAGAGGGTGATGGGATGCTTTTATCATCGGGAGAAGAGACCTCTCTAGACATGATGGTGGATCCGTTCAATATAATGGGGGAATTCTCTTTGACTGATATTCTGGATTCAGACTTCTCTGATGCAAAGCATGACTTCAATCATTGCAAGGGCAGTATTTACGATCCATATCTTTCTGCAGAGAACTCATTGGTTTTCTCAGATGATGAAGCTCTTCAAGATTGGACAGGAAGTTGCAATTACTGCCAAACCAATGTGCCTACTATCAAAGATCAATCTTTCAGTTCTTGCCTATTTTTTGATGGAGAGTGGCTAGCTGAGTGA 954 0.4235 MGRSPSCSKEGLKRGAWTAYEDKILTEYIAVHGEGRWRTLPKRAGLQRCGKSCRLRWLNYLRPDIKRGNISPDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGKKVQDGHQTSASHGKGASAPSKENNQHKSEASNCNMEVSTSPISNVVYTKAIKSTNFFVSPQQTSTVMFKESYNSELPLAKLTNLSATSMANAVESNVEGDGMLLSSGEETSLDMMVDPFNIMGEFSLTDILDSDFSDAKHDFNHCKGSIYDPYLSAENSLVFSDDEALQDWTGSCNYCQTNVPTIKDQSFSSCLFFDGEWLAE* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00676 317 SMART sant 66 114 IPR001005 -
Pte3g00676 317 SMART sant 13 63 IPR001005 -
Pte3g00676 317 Gene3D - 11 67 - -
Pte3g00676 317 CDD SANT 16 61 IPR001005 -
Pte3g00676 317 Gene3D - 70 148 - -
Pte3g00676 317 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 179 - -
Pte3g00676 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pte3g00676 317 FunFam Myb transcription factor 11 67 - -
Pte3g00676 317 MobiDBLite consensus disorder prediction 115 148 - -
Pte3g00676 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pte3g00676 317 FunFam Transcription factor TT2 70 145 - -
Pte3g00676 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pte3g00676 317 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pte3g00676 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte3g00676 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pte3g00676 317 CDD SANT 71 112 IPR001005 -
Pte3g00676 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00676 Pte-Chr3 5376891 5378208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00676 4 143 MYB Transcription Factor Family AT3G13540 64.286 5.24e-61 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte3g00676 Myb_DNA-binding 4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00676 K09422 - qsa:O6P43_002678 295.434