Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00675 ATGATGAACTCAAGAAACAGGTTTCCCTTCACTGCATCTCAGTGGCAAGAGCTCGAACAACAAGCTCTTATCTACAAGTACATGGCTTCAGGAATCCCCATCCCTCCTGATCTCCTCTTCTCTGTAAGAAGAAGCTATCTGGACTCCCCTATGTCTGCAAGACTCCTGTCTCATCAACCACAACATGTTGGATGGAACTACTTGCAAATGAGCTTAGGCAGAAAAATAGACCCAGAACCAGGAAGATGCAGAAGAACAGATGGCAAGAAATGGAGGTGTTCAAAAGAGGCCTACCCAGATTCTAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAACCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAGCAACGTCTACAAACACAAACACTTCAACACCTCAAATCACCAAGCACCACCCCTCTGCTGCACTCGCCCCGGCCAGGCATTCTGCCTCTGCACATTTATCATCACCGACTTCCGACCACCGACCACAGCAACATTCTCTTCACCATCCCTTTCTTTATCATACTAACAATAACAACGGTAGCAGTAATGCTTCGTCAAGACCATCAGGTAACGCAACTGGTTTGTCATTTCAAGACAACAATGCTCCTTTGTTTCTTGATAGCGGTGCATCCTATTCCCTAAGCAATGCAGACTACAGAAACAGGTACACCTATGGACTGAAGGAAGAGGAGGATGAGCATGCTTTCTTTTCAGAGCCTTCTGGGACTATGAAAAGTCTTTCAGCTTCATCTGTCGATGAGTCCTGGCAACTCACACCCCTGACGATGAGCTCTTCATCTTCGTCAAAACAAAGGAGCTGTTCTGGTAATTTACAGGACTATGCATACTTGCAGATTCAGAATCTTAGTGATAGTACTAAACAGCAAGACCAAGACCAACGCAGTTGCTATGGTTTGAATGGTGATATCAAATGTGGAATTCCCATGAGGTTGGGGAATGATGAACCCCAGAAGACCATGCACCACTTCTTGGATGAATGGCCCCACAAAGGCAGAGATTCATGGCTAGATTTGGATGATAAAACATCAAATGCTTCCGCAGTTTCAACAACCCGCCTCTCAATTTCAATTCCAACTTCTCACCATGATTTTCGAACCAACTAA 1134 0.4506 MMNSRNRFPFTASQWQELEQQALIYKYMASGIPIPPDLLFSVRRSYLDSPMSARLLSHQPQHVGWNYLQMSLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKATSTNTNTSTPQITKHHPSAALAPARHSASAHLSSPTSDHRPQQHSLHHPFLYHTNNNNGSSNASSRPSGNATGLSFQDNNAPLFLDSGASYSLSNADYRNRYTYGLKEEEDEHAFFSEPSGTMKSLSASSVDESWQLTPLTMSSSSSSKQRSCSGNLQDYAYLQIQNLSDSTKQQDQDQRSCYGLNGDIKCGIPMRLGNDEPQKTMHHFLDEWPHKGRDSWLDLDDKTSNASAVSTTRLSISIPTSHHDFRTN* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00675 377 Pfam QLQ 9 42 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte3g00675 377 ProSiteProfiles WRC domain profile. 77 121 IPR014977 -
Pte3g00675 377 PANTHER GROWTH-REGULATING FACTOR 5 8 372 IPR031137 GO:0005634|GO:0006351|GO:0032502
Pte3g00675 377 MobiDBLite consensus disorder prediction 172 198 - -
Pte3g00675 377 SMART QLQ_2 8 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte3g00675 377 Pfam WRC 78 120 IPR014977 -
Pte3g00675 377 ProSiteProfiles QLQ domain profile. 9 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Pte3g00675 377 MobiDBLite consensus disorder prediction 126 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00675 Pte-Chr3 5369190 5371116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00675 7 120 GRF Transcription Factor Family AT3G13960 69.298 1.26e-53 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Pte3g00675 WRC 8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00675 - - qsa:O6P43_022479 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00675 3 5369190 5371116 Pte3g00675 3 5369190 5371116 RCT