Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00658 ATGACAACGACAATAACAGCTCAAGATAAATGGCCAAGCTATCGTAAGCTTTCTTCTTTAAGAAGCCACCTGCCAGAGGTGCCAATACTGGCCTTGACCGCTACTGCTGTTCCAAAGGTTCAGAAAGACGTTCTGATATCCTTGCACTTGGAAAGCCCTTTGGTGCTAAAATCTTCCTTCAATCGTCCCAACATATATTATGAAGTAAAATACAAAGATCTTTTAGATAATGTGTACGATGATTTGTCCAAGCAACTGAGATCCAGTGGAGATGTCTGCGCAATAGTTTACTGCCTCGAACGGTCAACTTGTGATGACTTGGCTGCTCATCTGTTGAAAAATGGCATCTCTTGTGCTGCTTATCATGCAGGATTAAATAATAAACTGAGGAGCTCTGTCTTAGATGATTGGATGTCTTCGAAGACAAGAGTTGTTGTTGCCACAGTTGCTTTTGGGTATGATGATTCTCTTGGTATTGATAGAAAAGATGTCAGAATTGTTTGCCACTTCAATATTCCAAAGTCAATGGAAGCATTCTATCAAGAGTCTGGCAGAGCAGGTCGGGATCAATTGCCGTCTAAAAGCCTTTTGTATTATGGAAGTGATGATCGTAGAAGAATGGAATTCATACTAAGCAAAGCTGGTGGCAAGAAATTGCAATCCTCAAGCTCACAGGATGATTCAATAAAAAAGTCTTTGACTGATTTCAGTCAGATGATTGAATATTGCGAAGGATCTGGATGTCGCAGGGAAAAAATTCTGGACAGTTTCGGTGAGCAGGTAACACCAGCACTGTGCAAAAATTCATGTGATGTCTGCAGACACCCAAACCTAGTTGCAAAGTATCTGGGGGAGCTTTCAACTGTCTGTGCTATTCGTCAGAAAAGTGGCCCTTCCAGAGTTTTCTTTAGCAGTTCTACAGACTTAATTGATGAAGGGCAATTTTCTGAATTCTGGAATCGTGATGATGAATTCAACGTTTCAGAAGAAGATATCTCTGATTCAGATGATGGTGAAGAGGTTGTCAAGAACTTAGCTGGGTCAAAGTTCCGATCAAAAATGGACCTGAATGAAAAGTTTGAGTTCTTGCAACGTGCTGAAGAAAAGTATTACAGGAATGACAATTCTGTTAAAAATGCAAATAATAAAACTGACAAAAGATCTATATCTGAAGTGCTTAGAGAAGGAAGCAGAGAAAGGTTAAGAAATGCTCTAAAGCAGGCTCAGCGCCAACTTGATAATATCAAGATCGAAGTAGAAGCATCAGTATCTTTCCTGGAAGAAGAATGTTACAAGAAATATGGGAATTCTGGAAAATCATTTTATTACTCACAGGTGGCAAGTACTATAAGGTGGCTATCAACCACCAATTCTACTGACTTGATGAATCGACTCAGTGCCAGAAGTCCTGTAGCCACGACAGAAGTCTTATCTGAAGAACAACATCCCCAGACCCCAGTACCTTTGTCTCACCACCATTCGAAAGAAACCAGTAACAACGAACTCAAAGAGTGCACTAGATTAGACAGTCCTAAACGTGATTCCGCAACTGAAAGTGCTTCTTCGAAAACCACTTTGCCTCCAATTCTCTCATTCTCAGAGTTTGTCAACGGCAGAAAGCTCAAAGGCAGCCCGTCAAAGATAATGCACAAGCATCCAACGAATAGAGATAAAAAGAGAATGAGGTTGAGATAG 1695 0.4059 MTTTITAQDKWPSYRKLSSLRSHLPEVPILALTATAVPKVQKDVLISLHLESPLVLKSSFNRPNIYYEVKYKDLLDNVYDDLSKQLRSSGDVCAIVYCLERSTCDDLAAHLLKNGISCAAYHAGLNNKLRSSVLDDWMSSKTRVVVATVAFGYDDSLGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGSDDRRRMEFILSKAGGKKLQSSSSQDDSIKKSLTDFSQMIEYCEGSGCRREKILDSFGEQVTPALCKNSCDVCRHPNLVAKYLGELSTVCAIRQKSGPSRVFFSSSTDLIDEGQFSEFWNRDDEFNVSEEDISDSDDGEEVVKNLAGSKFRSKMDLNEKFEFLQRAEEKYYRNDNSVKNANNKTDKRSISEVLREGSRERLRNALKQAQRQLDNIKIEVEASVSFLEEECYKKYGNSGKSFYYSQVASTIRWLSTTNSTDLMNRLSARSPVATTEVLSEEQHPQTPVPLSHHHSKETSNNELKECTRLDSPKRDSATESASSKTTLPPILSFSEFVNGRKLKGSPSKIMHKHPTNRDKKRMRLR* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00658 564 CDD SF2_C_RecQ 62 199 - -
Pte3g00658 564 Gene3D - 6 61 IPR027417 -
Pte3g00658 564 Gene3D - 62 291 IPR027417 -
Pte3g00658 564 MobiDBLite consensus disorder prediction 472 493 - -
Pte3g00658 564 PANTHER DNA HELICASE RECQ FAMILY MEMBER 12 466 - -
Pte3g00658 564 Coils Coil 398 418 - -
Pte3g00658 564 Pfam Helicase conserved C-terminal domain 88 188 IPR001650 -
Pte3g00658 564 MobiDBLite consensus disorder prediction 544 564 - -
Pte3g00658 564 MobiDBLite consensus disorder prediction 472 564 - -
Pte3g00658 564 Pfam RecQ zinc-binding 202 274 IPR032284 -
Pte3g00658 564 MobiDBLite consensus disorder prediction 517 531 - -
Pte3g00658 564 MobiDBLite consensus disorder prediction 494 516 - -
Pte3g00658 564 FunFam RecQ family DNA helicase 62 291 - -
Pte3g00658 564 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 288 IPR027417 -
Pte3g00658 564 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 74 230 IPR001650 -
Pte3g00658 564 SMART helicmild6 105 190 IPR001650 -
Pte3g00658 564 NCBIfam RecQ family ATP-dependent DNA helicase 11 274 IPR004589 GO:0004386|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00658 Pte-Chr3 5233544 5239038 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00658 73 203 Eukaryotic Initiation Factors Gene Family AT3G19760 22.901 4.71e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00658 K10901 - qsu:111996696 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00658 3 5233544 5239038 Pte3g00658 3 5233544 5239038 RCT