Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pte3g00651 | ATGCAGCAACAGAGGCTAAGACAACAACAGGCTATGATGCAGCACTCTCTCTATCCTCACCCCGGTCTTTTGGCGGCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACTTGCCGCAGTGTATATGTGGGGAACATTCATCCTGAAGTTACAGAAGTCCTTCTTCACGAGGTGTTTACAACAGCTGGTGTCATTGAATCATGCAAGCTCATCAGGAAAGAGAAGTCATCCTACGGGTTTGTAGATTACTATGATCGTAGATCAGCAACTGTCGCTATTCTCACTCTAAATGGAAGGCATCTTTTTGGGCAGCCTATTAAAGTTAACTGGGCATATGCTAGTAGCCAGAGGGAAGATACAACAGGCCATTATAATATTTTTGTTGGGGACCTTAGCCCCGAGGTCACAGATGCAACATTGTTTAATTGCTTCTCTGTTTACCCTAGTTTGTCAGATGCAAGGGTTATGTGGGACCAGAAGACAGGGCGCTCAAGGGGATATGGGTTTGTTTCTTTCCGAAGCCAGCAGGATGCTCAAAGTGCGATCAATGATTTAAATGGAAAGTGGCTGGGAAGTAGACAGATTCGGTGTAACTGGGCTACCAAAGGGGCTAATACTGGTGATGAGAAGCAGGCTTCAGATTCCAGAAGTGTAGTGGAACTAACACATGGAACATCTGATGAGGGTGAAGAGAACGATGGCGGTGATGCTCCAGAGAATAATCCTCTATACACAACTGTTTATGTTGGCAATCTTGCCCCAGAGGTAATGTCTGTTGATCTCCATCGTCATTTCCATGCTCTTGGTGCTGGAACAATTGAAGATATTCGGGTGCAACGGGACAAGGGTTTTGGCTTTGTGAGATATAGTTCACATGCGGAAGCAGCTCTTGCTATACAGATGGGTAATGGTCGGATTTTCTTTGGCAAACCAATCAAGTGCTCATGGGGGAGCAAACCTACTCCTCCAGGAACATCCTCAAAGCCTCTTCCCCCACCATCGGCTGCATATATGCCTGGTATTACAGCCGCTGACCTTGCAGCATACGAACGTCTCATGGCTCTGAGCAAAATGGGTGCTGCACAAGGCCTTATGCATCCAAGTCAGCATACCCTTAAGCATGCAGCCATGGGGATGGATGCTGCTGGAGCAAGTCAAGCTATGTATGATGGCGGATACCGAAGTCTTGCAACCGCACAGCATCTTATGTATTATCAGTAA | 1245 | 0.4675 | MQQQRLRQQQAMMQHSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPEVTEVLLHEVFTTAGVIESCKLIRKEKSSYGFVDYYDRRSATVAILTLNGRHLFGQPIKVNWAYASSQREDTTGHYNIFVGDLSPEVTDATLFNCFSVYPSLSDARVMWDQKTGRSRGYGFVSFRSQQDAQSAINDLNGKWLGSRQIRCNWATKGANTGDEKQASDSRSVVELTHGTSDEGEENDGGDAPENNPLYTTVYVGNLAPEVMSVDLHRHFHALGAGTIEDIRVQRDKGFGFVRYSSHAEAALAIQMGNGRIFFGKPIKCSWGSKPTPPGTSSKPLPPPSAAYMPGITAADLAAYERLMALSKMGAAQGLMHPSQHTLKHAAMGMDAAGASQAMYDGGYRSLATAQHLMYYQ* | 415 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pte3g00651 | 414 | Gene3D | - | 127 | 226 | IPR012677 | - | |
Pte3g00651 | 414 | Gene3D | - | 232 | 332 | IPR012677 | - | |
Pte3g00651 | 414 | Gene3D | - | 34 | 126 | IPR012677 | - | |
Pte3g00651 | 414 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 44 | 330 | - | - | |
Pte3g00651 | 414 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 47 | 121 | IPR000504 | GO:0003723 | |
Pte3g00651 | 414 | SUPERFAMILY | RNA-binding domain, RBD | 246 | 336 | IPR035979 | GO:0003676 | |
Pte3g00651 | 414 | SUPERFAMILY | RNA-binding domain, RBD | 46 | 210 | IPR035979 | GO:0003676 | |
Pte3g00651 | 414 | MobiDBLite | consensus disorder prediction | 211 | 249 | - | - | |
Pte3g00651 | 414 | CDD | RRM2_PUB1 | 131 | 210 | - | - | |
Pte3g00651 | 414 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 253 | 327 | IPR000504 | GO:0003723 | |
Pte3g00651 | 414 | MobiDBLite | consensus disorder prediction | 221 | 238 | - | - | |
Pte3g00651 | 414 | FunFam | Oligouridylate-binding protein 1C | 1 | 130 | - | - | |
Pte3g00651 | 414 | FunFam | Oligouridylate-binding protein 1C | 230 | 331 | - | - | |
Pte3g00651 | 414 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 132 | 210 | IPR000504 | GO:0003723 | |
Pte3g00651 | 414 | FunFam | oligouridylate-binding protein 1-like isoform X2 | 131 | 225 | - | - | |
Pte3g00651 | 414 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 255 | 321 | IPR000504 | GO:0003723 | |
Pte3g00651 | 414 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 49 | 115 | IPR000504 | GO:0003723 | |
Pte3g00651 | 414 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 134 | 204 | IPR000504 | GO:0003723 | |
Pte3g00651 | 414 | SMART | rrm1_1 | 133 | 206 | IPR000504 | GO:0003723 | |
Pte3g00651 | 414 | SMART | rrm1_1 | 48 | 117 | IPR000504 | GO:0003723 | |
Pte3g00651 | 414 | SMART | rrm1_1 | 254 | 323 | IPR000504 | GO:0003723 | |
Pte3g00651 | 414 | SMART | rrm2_1 | 254 | 323 | IPR003954 | GO:0003676 | |
Pte3g00651 | 414 | SMART | rrm2_1 | 133 | 206 | IPR003954 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pte3g00651 | Pte-Chr3 | 5177898 | 5183029 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pte3g00651 | 48 | 327 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 32.646 | 5.02e-32 | 126 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pte3g00651 | K13201 | - | egr:104436394 | 687.567 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pte3g00651 | 3 | 5177898 | 5183029 | Pte3g00651 | 3 | 5177898 | 5183029 | RCT |