Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00651 ATGCAGCAACAGAGGCTAAGACAACAACAGGCTATGATGCAGCACTCTCTCTATCCTCACCCCGGTCTTTTGGCGGCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCTCCTGGGTTTGATTCAAGTACTTGCCGCAGTGTATATGTGGGGAACATTCATCCTGAAGTTACAGAAGTCCTTCTTCACGAGGTGTTTACAACAGCTGGTGTCATTGAATCATGCAAGCTCATCAGGAAAGAGAAGTCATCCTACGGGTTTGTAGATTACTATGATCGTAGATCAGCAACTGTCGCTATTCTCACTCTAAATGGAAGGCATCTTTTTGGGCAGCCTATTAAAGTTAACTGGGCATATGCTAGTAGCCAGAGGGAAGATACAACAGGCCATTATAATATTTTTGTTGGGGACCTTAGCCCCGAGGTCACAGATGCAACATTGTTTAATTGCTTCTCTGTTTACCCTAGTTTGTCAGATGCAAGGGTTATGTGGGACCAGAAGACAGGGCGCTCAAGGGGATATGGGTTTGTTTCTTTCCGAAGCCAGCAGGATGCTCAAAGTGCGATCAATGATTTAAATGGAAAGTGGCTGGGAAGTAGACAGATTCGGTGTAACTGGGCTACCAAAGGGGCTAATACTGGTGATGAGAAGCAGGCTTCAGATTCCAGAAGTGTAGTGGAACTAACACATGGAACATCTGATGAGGGTGAAGAGAACGATGGCGGTGATGCTCCAGAGAATAATCCTCTATACACAACTGTTTATGTTGGCAATCTTGCCCCAGAGGTAATGTCTGTTGATCTCCATCGTCATTTCCATGCTCTTGGTGCTGGAACAATTGAAGATATTCGGGTGCAACGGGACAAGGGTTTTGGCTTTGTGAGATATAGTTCACATGCGGAAGCAGCTCTTGCTATACAGATGGGTAATGGTCGGATTTTCTTTGGCAAACCAATCAAGTGCTCATGGGGGAGCAAACCTACTCCTCCAGGAACATCCTCAAAGCCTCTTCCCCCACCATCGGCTGCATATATGCCTGGTATTACAGCCGCTGACCTTGCAGCATACGAACGTCTCATGGCTCTGAGCAAAATGGGTGCTGCACAAGGCCTTATGCATCCAAGTCAGCATACCCTTAAGCATGCAGCCATGGGGATGGATGCTGCTGGAGCAAGTCAAGCTATGTATGATGGCGGATACCGAAGTCTTGCAACCGCACAGCATCTTATGTATTATCAGTAA 1245 0.4675 MQQQRLRQQQAMMQHSLYPHPGLLAAPQIEPILSGNLPPGFDSSTCRSVYVGNIHPEVTEVLLHEVFTTAGVIESCKLIRKEKSSYGFVDYYDRRSATVAILTLNGRHLFGQPIKVNWAYASSQREDTTGHYNIFVGDLSPEVTDATLFNCFSVYPSLSDARVMWDQKTGRSRGYGFVSFRSQQDAQSAINDLNGKWLGSRQIRCNWATKGANTGDEKQASDSRSVVELTHGTSDEGEENDGGDAPENNPLYTTVYVGNLAPEVMSVDLHRHFHALGAGTIEDIRVQRDKGFGFVRYSSHAEAALAIQMGNGRIFFGKPIKCSWGSKPTPPGTSSKPLPPPSAAYMPGITAADLAAYERLMALSKMGAAQGLMHPSQHTLKHAAMGMDAAGASQAMYDGGYRSLATAQHLMYYQ* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00651 414 Gene3D - 127 226 IPR012677 -
Pte3g00651 414 Gene3D - 232 332 IPR012677 -
Pte3g00651 414 Gene3D - 34 126 IPR012677 -
Pte3g00651 414 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 44 330 - -
Pte3g00651 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 121 IPR000504 GO:0003723
Pte3g00651 414 SUPERFAMILY RNA-binding domain, RBD 246 336 IPR035979 GO:0003676
Pte3g00651 414 SUPERFAMILY RNA-binding domain, RBD 46 210 IPR035979 GO:0003676
Pte3g00651 414 MobiDBLite consensus disorder prediction 211 249 - -
Pte3g00651 414 CDD RRM2_PUB1 131 210 - -
Pte3g00651 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 253 327 IPR000504 GO:0003723
Pte3g00651 414 MobiDBLite consensus disorder prediction 221 238 - -
Pte3g00651 414 FunFam Oligouridylate-binding protein 1C 1 130 - -
Pte3g00651 414 FunFam Oligouridylate-binding protein 1C 230 331 - -
Pte3g00651 414 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Pte3g00651 414 FunFam oligouridylate-binding protein 1-like isoform X2 131 225 - -
Pte3g00651 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 255 321 IPR000504 GO:0003723
Pte3g00651 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 115 IPR000504 GO:0003723
Pte3g00651 414 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 204 IPR000504 GO:0003723
Pte3g00651 414 SMART rrm1_1 133 206 IPR000504 GO:0003723
Pte3g00651 414 SMART rrm1_1 48 117 IPR000504 GO:0003723
Pte3g00651 414 SMART rrm1_1 254 323 IPR000504 GO:0003723
Pte3g00651 414 SMART rrm2_1 254 323 IPR003954 GO:0003676
Pte3g00651 414 SMART rrm2_1 133 206 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00651 Pte-Chr3 5177898 5183029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00651 48 327 Eukaryotic Initiation Factors Gene Family AT2G23350 32.646 5.02e-32 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00651 K13201 - egr:104436394 687.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00651 3 5177898 5183029 Pte3g00651 3 5177898 5183029 RCT