Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00648 ATGGCGAAGCCTGCGAGTGAGAAGCCAGCTGAGAGAAGTGATCCCAAGTACAAAGGAGTACGGAAGAGGAAATGGGGAAAATGGGTGTCGGAAATCAGATTACCCAATAGCAGGGAGAGGATTTGGTTGGGGTCATATGACTCAGCGGAGAAGGCGGCGCGTGCTTTTGACGCTGCACTGTACTGCCTGCGAGGGCGTTCAGCTCAGTTTAACTTCCCGGATAACCCGCCTGACATTCCCGAAGGAAGGTCGCTAACGCCTACTGAGGTACAAGCGGCGGCAGCACATTTTGCAAAGTCAGAGTCGGAGCCACCAAAGAGGTCACATCAGTGTGTGTCTGAGTTGCAGATGATGATGGAGTCTCCTTCTCCTTCAGTTTCGGATGGGATGGCACAAACGGGCATTGACGTCACCCTAAACGGGTCATTTTTTGACATGATCGGGTCAATCGGTTCAGGCAGTAACACATCGGATTATGGATTGTTTCCGGGTTTTGATGACTTATTTTCACCAGTGATGCCTACCGTTGACTATGAAGAAGAAACTTTTGATGGGACGGTAGATCAACTTTCATTCTTATGGAATTTCTGA 591 0.4941 MAKPASEKPAERSDPKYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSAEKAARAFDAALYCLRGRSAQFNFPDNPPDIPEGRSLTPTEVQAAAAHFAKSESEPPKRSHQCVSELQMMMESPSPSVSDGMAQTGIDVTLNGSFFDMIGSIGSGSNTSDYGLFPGFDDLFSPVMPTVDYEEETFDGTVDQLSFLWNF* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00648 196 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Pte3g00648 196 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Pte3g00648 196 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Pte3g00648 196 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 127 - -
Pte3g00648 196 FunFam Ethylene-responsive transcription factor 2 16 74 - -
Pte3g00648 196 Gene3D AP2/ERF domain 16 74 IPR036955 GO:0003700|GO:0006355
Pte3g00648 196 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
Pte3g00648 196 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Pte3g00648 196 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Pte3g00648 196 MobiDBLite consensus disorder prediction 1 23 - -
Pte3g00648 196 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00648 Pte-Chr3 5161718 5163178 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00648 16 197 AP2-EREBP Transcription Factor Family AT1G19210 51.832 1.78e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte3g00648 AP2 7.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00648 - - jre:109020467 270.011