Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00646 ATGAAGACTCCTTCGAATGGCTTCTTGCCAAATTCTGGTGACGGACAACGAAATACCATTAATTCAGAATTATGGCATGCATGTGCCGGACCACTGGTTTCCCTGCCAACTGTAGGAAGTCTTGTGGTTTACTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCTATGCACAAGGAGACTGATTTCGTACCCAGCTACCCTAACCTCCCTTCCAAGTTAATTTGCATGCTTCACAACGTCACATTACATGCAGATCCTGAAACGCATGAGGTCTATGCACAGATGACACTTCAGCCTGTAAACAAATATGACAAAGAAGCGTTATTGGCATCTGACATTGGTCTTAAGCAAACCAGACAACCTGCTGAATTTTTCTGTAAAACCCTCACAGCTAGCGATACAAGCACTCATGGTGGATTCTCTGTTCCTCGCAGAGCAGCAGAGAAGATCTTCCCATCTCTTGACTTCTCATTGCAACCACCTGCTCAGGAGCTAGTTGCTAAAGATATACATGACAACACATGGACATTCAGGCATATTTTTCGTGGCCAACCTAAAAGGCACCTGCTGACAACTGGCTGGAGTATCTTTGTTAGCACAAAAAGATTGTTTACTGGAGATTCTGTTCTTTTTATTAGAGATGAAAAGTCACAACTTCTTTTGGGTATAAGACGTGCTAATAGACAGCAGCCAGGTCTCTCTTTATCCGTTATTTCGAGTGACAGCATGCACATTGGTGTTGTTGCTGCAGCTGCTCATGCTGCAGCAAATAGTAGCCCTTTTACTATCTTTTACAATCCAAGGGCCAGCCCTTCAGAGTTTGTGATTCCACTGGCAAAATATTATAAAGTTATGTATACTCAAGTTTCCCTTGGAATGAGGTTCAGAATGATGTTTGAGACAGAGGATTCAGGAGTTCACAGATACATGGGTACAATAACTGGTGTCAGTGACTTGGATTCTGTGAGGTGGAAAAATTCACAATGGCGCAATCTTCAAGTTGGGTGGGACGAATCAACAGCTGGTGAACGACCCAGCAGGGTATCACCTTGGGAGATAGAGCCTGTCATGACGCCATTCTACATTTGTCCACCTCCATTCTTTAGGCCCAAGTTTCCCAGGAAAATGCCAGATGATCAGTCCGATAATGAGAATGCTATTAAAAGAGCTATGCCATGGATGGGAGATGACTTTGGCATGGGGGATACTTCAAGTACAACATCTCCTGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAACCAGCTTTCTACAGCTGTTCAATCAGGAATGTTTCCATCCATGTTTTCAGCAAACTCTGTTGATAACAATCTCAGTAATGATGACCCATCCAAATTATTAAGCTTTCAAGCCCCAGTATTGTCTACACCAAGTCTAAAATTTAAAGCAAATCCAGACAATCAAGTCAGTCATTTGCAACAGCCGCCTGTAACATCAACCCAACAGCAACAGATGCAGTCATTGTTTCAAAGTCCTGTCAACCAGTTGCAGCAGCAAAGACAAGAGCAACAACAACCAAATCCTCAGGAACTGCTAAACATGCGACAACTGCAACAGATAGATCAACAGCAGCACCAACAGAAACAATTAGATCCACGGCCTCCTGTAACTAATGGAGCAGTTGCTTCTAACTTCATTTCAAGTCAAGGCATGCAGCAACCTTTGCAGTACTTTCAGTCTCAGCAACAACCACTGACAGGCAGCATCTCATCGCAGCAGGGTTTGCATTCTGCTAGCAAAACTCCATTCCCTATCAAATCGTTGCCTCATGACTCACAGTTACAGCAACAGATGGAACAGCCACATACTCTTTTACAGGGGCAGCAGCCCTCATTACAGTTGTCGGGACAAAGTCTATCGCAGAGGGGCCTTCTTCAACAGGAAGTGCCACAACTATCGCAGCAAAACCTGTCTGAGCAGCAGCTGAAGTTGCAATTACTTCAAAAACTGCAGCAGCAGCAGCCGCAGCCGCCACATCTACTTTCCCCAACTAGCACATTGGCGCAGCCACAGCTGCTCCAACAGCATCTTGCAAATCAACAAAACCTGCAATCACAGCAGGTCCTTTTGACTCGGCATCAGTTACAACAGCTCACCAGCAATGCCTTCACAACAGAAGCGCTTCTCAATGGAAACGGCCTCTCATCTTCAGCACTGATCCAATCACAACGACTCCCAGTTAGCCAACCTCAAAGTATGCATAAACCACTGACGATAACAAGAGATCCTTCTGGGCTCACAGATGGCGATTTTACATCATGCTCTACATCACCGTCAACTATTAACTGCCGGGCATCTCCTCCAAACCTCTTGAATAGGAATCTGCAAGAGCCACCCTTATTAGGGGGGAATACTGCATTACAGCCCATGAATCACATGGTTCAGAAGCTTCAAAGCAAATCTGATGTTCAGATCAAACATGAGTTGCCTAGTCTAAAAGGGCCAGATAAAACAAAGTTCAATGGGTCTGTCACTGATCAATTGGAAGCTTCTTCTTCTGGAACATCATATTGTCTTGATCCTGGTAATATCCCTCAGAGTTTTCCAATGCCAGCTTTCTGCTTGGATGGTGATGTCCAATCTCATCCTCCGAGTAATATTCCCCTTGCTAATAATCTTGATGGATTGACTCCTGACACTATGCTTTCAAGGGAAAGTGACTCTCAGAAAGAGCTCCACAATTTGCTTTCTAACTATGGCGGGGTTCCAAGGCATATTGAGACAGAGCTGTCCACTGCTGGTATTAGTTCTCAGTCATTTGGGGTCCCAGATATTCCTTTTAAACCTGGTTGCACCAATGATGTTGTAAATGATACTGGCATACTGAATAATGGATTGTGGACCAATCAGACCCAACGTATGAGAACATTCACAAAGGTGCAAAAACGTGGATCTGTTGGAAGATGTATTGACATTAACCGTTACAAGGGATATGATGAACTCCGCCATGATATAGCTCACATGTTTGGGATTGAAGGGCAAATGGAAGATCCTCAGAGAATTGACTGGAAGTTAGTCTACGTAGATCATGAAAATGACATACTTCTTGTTGGTGATGATCCTTGGGAGGAGTTCGTGAGTTGTGTGCAGAGCATAAAGATTTTGTCATCTGTGGAAGTGCAGCGGATGAGCTTAGACAGAGATCTGGATAATGTTGCCCTTCCCAATCAAGCTTGTAGTGGAACGGATAGTGGAAATCTATGTAGGGCACAGTACGATGATAATTCTGCTGCCTCCTTCAATTGCTAG 3279 0.4428 MKTPSNGFLPNSGDGQRNTINSELWHACAGPLVSLPTVGSLVVYFPQGHSEQVAASMHKETDFVPSYPNLPSKLICMLHNVTLHADPETHEVYAQMTLQPVNKYDKEALLASDIGLKQTRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPSLDFSLQPPAQELVAKDIHDNTWTFRHIFRGQPKRHLLTTGWSIFVSTKRLFTGDSVLFIRDEKSQLLLGIRRANRQQPGLSLSVISSDSMHIGVVAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYYKVMYTQVSLGMRFRMMFETEDSGVHRYMGTITGVSDLDSVRWKNSQWRNLQVGWDESTAGERPSRVSPWEIEPVMTPFYICPPPFFRPKFPRKMPDDQSDNENAIKRAMPWMGDDFGMGDTSSTTSPGLSLVQWMSMQQNNQLSTAVQSGMFPSMFSANSVDNNLSNDDPSKLLSFQAPVLSTPSLKFKANPDNQVSHLQQPPVTSTQQQQMQSLFQSPVNQLQQQRQEQQQPNPQELLNMRQLQQIDQQQHQQKQLDPRPPVTNGAVASNFISSQGMQQPLQYFQSQQQPLTGSISSQQGLHSASKTPFPIKSLPHDSQLQQQMEQPHTLLQGQQPSLQLSGQSLSQRGLLQQEVPQLSQQNLSEQQLKLQLLQKLQQQQPQPPHLLSPTSTLAQPQLLQQHLANQQNLQSQQVLLTRHQLQQLTSNAFTTEALLNGNGLSSSALIQSQRLPVSQPQSMHKPLTITRDPSGLTDGDFTSCSTSPSTINCRASPPNLLNRNLQEPPLLGGNTALQPMNHMVQKLQSKSDVQIKHELPSLKGPDKTKFNGSVTDQLEASSSGTSYCLDPGNIPQSFPMPAFCLDGDVQSHPPSNIPLANNLDGLTPDTMLSRESDSQKELHNLLSNYGGVPRHIETELSTAGISSQSFGVPDIPFKPGCTNDVVNDTGILNNGLWTNQTQRMRTFTKVQKRGSVGRCIDINRYKGYDELRHDIAHMFGIEGQMEDPQRIDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSVEVQRMSLDRDLDNVALPNQACSGTDSGNLCRAQYDDNSAASFNC* 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00646 1092 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Pte3g00646 1092 Gene3D - 124 227 IPR015300 -
Pte3g00646 1092 SUPERFAMILY CAD & PB1 domains 978 1043 - -
Pte3g00646 1092 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 1054 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte3g00646 1092 MobiDBLite consensus disorder prediction 529 551 - -
Pte3g00646 1092 ProSiteProfiles PB1 domain profile. 965 1058 IPR000270 GO:0005515
Pte3g00646 1092 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Pte3g00646 1092 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pte3g00646 1092 CDD B3_DNA 125 226 IPR003340 GO:0003677
Pte3g00646 1092 SMART B3_2 126 228 IPR003340 GO:0003677
Pte3g00646 1092 MobiDBLite consensus disorder prediction 568 621 - -
Pte3g00646 1092 FunFam Auxin response factor 289 361 - -
Pte3g00646 1092 MobiDBLite consensus disorder prediction 468 516 - -
Pte3g00646 1092 MobiDBLite consensus disorder prediction 736 756 - -
Pte3g00646 1092 Gene3D - 960 1054 - -
Pte3g00646 1092 Pfam AUX/IAA family 962 1050 IPR033389 -
Pte3g00646 1092 Gene3D - 289 360 - -
Pte3g00646 1092 MobiDBLite consensus disorder prediction 529 543 - -
Pte3g00646 1092 FunFam Auxin response factor 124 228 - -
Pte3g00646 1092 FunFam Auxin response factor 960 1054 - -
Pte3g00646 1092 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00646 Pte-Chr3 5138489 5145382 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00646 1 484 B3 DNA Binding Superfamily AT1G19220 78.395 0.0 778
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte3g00646 AUX_IAA 3.9e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00646 K14486 - cave:132166648 1434.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00646 3 5138489 5145382 Pte3g00646 3 5138489 5145382 RCT