Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00641 ATGAAGGCTCCTTCCAATGGCTTCTTGCCAAATTCCGTCGACGGAGAACGAAAGACCATTAATTCAGAATTATGGCACGCGTGTGCCGGACCACTGGTTTCCTTGCCACCTGTAGGAAGTCTTGTTGTTTACTTCCCTCAAGGACACAGTGAGCAACAGGTTGCAGCATCTATGCACAAGGAGACTGATTTCGTACCCAGCTACCCTAACCTCCCTTCCAAGTTAATTTGCATGCTTCACAACGTCACGTTACATGCGGATACTGAAACAGATGAGGTCTATGCACAGATGACACTTCAACCTGTAAACAAATATGACAAAGAAGCGTTATTGGCATCTGACATGGGCCTTAAGCAAACCAGACAACCTGCTGAATTTTTCTGTAAAACCCTCACTGCTAGCGACACAAGCACTCACGGTGGATTCTCTGTGCCTCGCAGAGCAGCAGAGAAGATCTTCCCACCTCTAGACTTCTCAATGCAACCCCCTGCTCAAGAGATAGTAGCTAAAGATTTGCATGATAATACGTGGACATTCCGCCATATTTATCGCGGCCAACCAAAAAGGCACCTGCTGACCACTGGCTGGAGTGTCTTTGTTAGCACAAAAAGATTGTTTGCTGGAGATTCTGTTCTCTTTATTAGAGATGAAAAGTCACAACTCCTTTTGGGTATAAGGCGCGCTAATAGACAGCAGCCAGCTCTCTCCTCATCAGTAATTTCAAGTGACAGCATGCACATCGGTATTCTTGCCGCTGCCGCACATGCTGCAGCAAATAGTAGCCCTTTTACTATCTTCTACAATCCAAGGGCCAGCCCTTCAGAGTTTGTGATTCCACTGGCAAAATATAATAAAGCTATGTATACGCAAGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACGGAGGAATCTGGCGTTCGCAGATACATGGGTACGATAACTGGCATTGCTGACTTGGATCCTGTTAGGTGGAAGAATTCACAATGGCGGAATCTTCAAGTTGGTTGGGATGAATCGACGGCTGGTGACCGACCCAGCAAGGTATCACTTTGGGAGATAGAGCCCGTCGTCACTCCATTCTACATTTGTCCACCTCCATTCTTTAGACCCAAGTTTCCTAGGCAACCGGGAATGCCAGATGATGAGTCTGATATTGAGAATGCTTTCAAAAGAGCTATACCATGGATGGGAGATGACTTTGGCATGAAGGATGCTTCAAATTCAATATTTCCAGGTTTAAGTTTAGTGCAGTGGATGAGCATGCAGCAGAATAACCAGCTTTCTCCAGCTTCTCAATCAGGAATGTTTCCGTCCGTGTTTTCAGCGAACTCTGTGCATAACAGTCTCAGCAATGATGACCCGTCCAAATTATTAAGTTTTCAAGCTCCAATCATGTCTACACCGAGTCTGCAATATAAAGCAAATCCACAAAACCAAGTCAGTCAGTTGCGACAGCCACCTGTTACCTGGTCCCAACAGCAACAGATGCAGCCATTGTTCCAAAGTCCTGTCAACCAGTTGCAGCAGCAAAGACAGCAGCAGCAGCAACCAAATGCTCAGGAACCAATAAACATGCAACAGCAGCTGCAGTTAACTCAACAGCAGCCGCAGTTAACTCAACAGCAGCACCAGCTACATCAACAACGACAACAGCAGCAGCAGCAGCAGCAGAAACAATTAGGTCTACAGCCTCCTGCAAATAATGTAGTTGCTTCTAACCTCATTTCAGGTCAAAGCATGCAGCAGCCAGTACAATACTCTCAGTTTCAGCATCAACATTCACTGGCAGGCAGCATCTCACCGCAGCAGGGTGTGCATTCTGCTAGCAAAACTTCATTTCCTTTTACGTCCTTGCCTCACGATTCACATTTACAGCAACAGATAGAGCAAACACCTGCCCTGTTACAACGGCAGCAGCAACAGCAAGCGCAACAGACACAATTGCAGCAGTCCTCGTTACAGTTGTTGCAACAAAGTCTGTCTCAGAAGGCCCTTCAGCAACAGCAAGTGCCACAACTGTCACAGCAAAACCTGTCCGAGCAGCAACTGCAGTTGCAGTTACTGCAAAAACTGCAGCAGCAGCAGCAACAACACCAACACCCGCAACCACATTTACTTTCCCCAACTAGCCCATTGTTGCAGCCTCAGTTGCTCCAACAACAGCTTGCAAATCAACAAAATCAATCGCAACAGGTCCCTTTGTCTCAGCATCAGTCACAACAGCTCCCCAGGGATGGTTTCTCAACCGAAAAGCTTCTCAATGGTAACAGCTTCTCGTCTTCAGCACTGATCCAATCACAACAATTCCCAGTTAACCAACCTCAAAGTATGCATAAACCACTGACAATAACAAGAGTTCCTTCTGGTCTCACAGATGGCGATGCTCCATCATGCTCTACATCACCATCAACTAATAATTGCCAGGTATCCCCTCCGAACCTCCTGAATAGGAATATGCAAGGGACACCCTTATTAGGGGGAAATACTGCAGTGCAGCCCACGAATAACATGGTGCAGGAGCTTCAATCCAAATCTGATGTACGGATCAAACATGAGTTGCCCATTGCAAAAGGGCCTGAGCAAATAAAGTTCAAAGGAGCCATCACAGATCAATTGGAAGCTTCTTCTTCTGGAACATCATATTGTCTCGATCCTGGTAACATCCCCCAGAGTTTCCCAATGCCAGCCTTCTGTATGGATGGCGATGTCCAGTCTCACCCTCGGAGTAATATTCCACTTTCTACTAATCTCGATGGACTGACAGCTGACACTTTGCTTTCGAGGGGATATGACTCTCAGAAAGACCTGCAAAATTTGCTTTCTAACTACGGTGGTGCTCCAAGGGATATTGAGACTGAGCTTTCCACTGCTGCTATCAGTTCTCAGTCATTTGGGGTCCCTGATATGCCTTTTAAACCTGGTTGCTCCAATGATGTTGCAATTAATGATACTGGCATACTGAATAACGGGTTGTGGACCAACCAGGCCCAACGCATGCGAACATTTACCAAGGTGCAAAAACGAGGGTCTGTAGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGATGAACTTCGGCATGATTTAGCTCGTATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCAGAGGACTGACTGGAAGTTGGTCTATGTAGATCATGAAAATGACATACTTCTTGTTGGGGATGACCCTTGGGAAGAGTTCGTGAGTTGTGTGCAGAGCATAAAGATTTTGTCATCTGTGGAAGTGCAGCAGATGAGCTTAGATGGAGACCTGGGTAACGTCCCTATTCCCAATCAAACTTGTAGTGGAGCGGATAGTGAAAATATATGGAGGGCACAGTACGATGATAATTCTGCTGCCTCCTTTAATCGCTAG 3390 0.4614 MKAPSNGFLPNSVDGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQQVAASMHKETDFVPSYPNLPSKLICMLHNVTLHADTETDEVYAQMTLQPVNKYDKEALLASDMGLKQTRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKSQLLLGIRRANRQQPALSSSVISSDSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGIADLDPVRWKNSQWRNLQVGWDESTAGDRPSKVSLWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDIENAFKRAIPWMGDDFGMKDASNSIFPGLSLVQWMSMQQNNQLSPASQSGMFPSVFSANSVHNSLSNDDPSKLLSFQAPIMSTPSLQYKANPQNQVSQLRQPPVTWSQQQQMQPLFQSPVNQLQQQRQQQQQPNAQEPINMQQQLQLTQQQPQLTQQQHQLHQQRQQQQQQQQKQLGLQPPANNVVASNLISGQSMQQPVQYSQFQHQHSLAGSISPQQGVHSASKTSFPFTSLPHDSHLQQQIEQTPALLQRQQQQQAQQTQLQQSSLQLLQQSLSQKALQQQQVPQLSQQNLSEQQLQLQLLQKLQQQQQQHQHPQPHLLSPTSPLLQPQLLQQQLANQQNQSQQVPLSQHQSQQLPRDGFSTEKLLNGNSFSSSALIQSQQFPVNQPQSMHKPLTITRVPSGLTDGDAPSCSTSPSTNNCQVSPPNLLNRNMQGTPLLGGNTAVQPTNNMVQELQSKSDVRIKHELPIAKGPEQIKFKGAITDQLEASSSGTSYCLDPGNIPQSFPMPAFCMDGDVQSHPRSNIPLSTNLDGLTADTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQSFGVPDMPFKPGCSNDVAINDTGILNNGLWTNQAQRMRTFTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDHENDILLVGDDPWEEFVSCVQSIKILSSVEVQQMSLDGDLGNVPIPNQTCSGADSENIWRAQYDDNSAASFNR* 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00641 1129 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Pte3g00641 1129 Coils Coil 540 560 - -
Pte3g00641 1129 MobiDBLite consensus disorder prediction 477 497 - -
Pte3g00641 1129 Gene3D - 125 228 IPR015300 -
Pte3g00641 1129 SMART B3_2 127 229 IPR003340 GO:0003677
Pte3g00641 1129 FunFam Auxin response factor 290 362 - -
Pte3g00641 1129 MobiDBLite consensus disorder prediction 542 565 - -
Pte3g00641 1129 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Pte3g00641 1129 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 1091 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pte3g00641 1129 MobiDBLite consensus disorder prediction 795 814 - -
Pte3g00641 1129 Pfam AUX/IAA family 999 1088 IPR033389 -
Pte3g00641 1129 Gene3D - 997 1091 - -
Pte3g00641 1129 MobiDBLite consensus disorder prediction 723 756 - -
Pte3g00641 1129 FunFam Auxin response factor 997 1091 - -
Pte3g00641 1129 FunFam Auxin response factor 125 229 - -
Pte3g00641 1129 ProSiteProfiles PB1 domain profile. 1002 1095 IPR000270 GO:0005515
Pte3g00641 1129 SUPERFAMILY DNA-binding pseudobarrel domain 117 256 IPR015300 -
Pte3g00641 1129 SUPERFAMILY CAD & PB1 domains 1016 1080 - -
Pte3g00641 1129 MobiDBLite consensus disorder prediction 584 627 - -
Pte3g00641 1129 CDD B3_DNA 126 227 IPR003340 GO:0003677
Pte3g00641 1129 Gene3D - 290 361 - -
Pte3g00641 1129 MobiDBLite consensus disorder prediction 794 814 - -
Pte3g00641 1129 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00641 Pte-Chr3 5036427 5043198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00641 1 484 B3 DNA Binding Superfamily AT1G19220 83.918 0.0 836
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pte3g00641 AUX_IAA 4.2e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00641 K14486 - jre:109021324 942.954