Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00624 ATGGTTTCCAGTGAAGACAGTTCATTAACACTATCAAGCCTGCCACTAGGTCAAGTGGGTATATGTGAGGTAGCCCTTCTCTTTGCTGTGTTGAGATGGTTCCTATGTTGGGGTTTTAGACTGTTGAGAAACAGACGGAACCATGGAATCATTGAAACCACTAGTGAAACACAGTCTTCTTCTGCTGCCGCTAATCCTTCTTGCTGGTTGTCATCCCAGATGATAAGAGATAGATATCTCATGCTGACAAGTTTCGATGATATTAAGGAAAGGCTGCCGGAGACTTGGGACACATGTGCTGTGTGCTTGAATCAGATGATGATGAGAGACGAGGTTAGGGAGTTACGGAACTGTTGTCATGTTTTCCACAAGGAATGCATAGACAGATGGTTGGATCATGATCAAGATAACCATAATCCAACTTGTCCACTTTGCAGGGCTCCTCTATTGTCTTGTCCTCTGCCATCAGAAAGCTCTTGCTGTATTCCTGCTCCTCAACCCAGTTGGGCAGTGGAGAGACTCATCTATCTCTTTGGTGACGACCTACCACGCTGTTAA 558 0.4516 MVSSEDSSLTLSSLPLGQVGICEVALLFAVLRWFLCWGFRLLRNRRNHGIIETTSETQSSSAAANPSCWLSSQMIRDRYLMLTSFDDIKERLPETWDTCAVCLNQMMMRDEVRELRNCCHVFHKECIDRWLDHDQDNHNPTCPLCRAPLLSCPLPSESSCCIPAPQPSWAVERLIYLFGDDLPRC* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00624 185 SMART ring_2 99 145 IPR001841 -
Pte3g00624 185 Pfam Ring finger domain 97 146 IPR001841 -
Pte3g00624 185 ProSiteProfiles Zinc finger RING-type profile. 99 146 IPR001841 -
Pte3g00624 185 PANTHER RING ZINC FINGER PROTEIN-RELATED 26 181 - -
Pte3g00624 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 152 IPR013083 -
Pte3g00624 185 SUPERFAMILY RING/U-box 77 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00624 Pte-Chr3 4878258 4879345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00624 5 182 C3H Transcription Factor Family AT5G20885 45.596 1.57e-36 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00624 K16281 - qsa:O6P43_021965 220.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00624 3 4878258 4879345 Pte3g00624 3 4878258 4879345 RCT