Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00616 ATGGGAAGAGCTGCAGACTCAACCCTAATCCGTACTGATCAACCTTCATCGTCTTCGTCGTCGTCTTCAACAGATAGCAGCAATCATCCTCCTGCTGCTTTAGTTGATTCCCCATCTTCATCTTCTTCCCTGTGCCACATGAATGATTGCAGAACCTGCAAACCAGATTTTAGCATCGACCTCAGACTTGGTCTTAGCATCTCTCCACATGAACGTGAGCTGCCTCCCTCTTCAAAGTCCAGGCAGCGACTTGAAGAATATTGGCCACCAATCAAATCCATTTTGAGGAACAGCCTTGAAGAGAGGGCACTGAACTGGCTTCAACCATCCTTGTTTGTCAAAGTTTACATGGAAGGCAGTCCAATTGGTAGAAAATTGAATCTGTTGGCATACGATGGCTATGATGGTCTCATTAAAGCTCTTGGCCAAATGTTCAGGATCATGATTCTATGTCCTGATCATGATGATACTCAAGAACTCTATCATGGTCAAAACCATGTATTAACCTTTCAGGACGAAGAAGGAGACTGGATGATGGTTGGCGATGTTCCTTGGGAGATGTTCGTGGCGAGTGTGAAAAGACTGAAGATCACGAGAGCAACAAGTTGGTAG 612 0.451 MGRAADSTLIRTDQPSSSSSSSSTDSSNHPPAALVDSPSSSSSLCHMNDCRTCKPDFSIDLRLGLSISPHERELPPSSKSRQRLEEYWPPIKSILRNSLEERALNWLQPSLFVKVYMEGSPIGRKLNLLAYDGYDGLIKALGQMFRIMILCPDHDDTQELYHGQNHVLTFQDEEGDWMMVGDVPWEMFVASVKRLKITRATSW* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00616 203 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 59 201 IPR003311 GO:0005634|GO:0006355
Pte3g00616 203 SUPERFAMILY CAD & PB1 domains 106 197 - -
Pte3g00616 203 MobiDBLite consensus disorder prediction 9 40 - -
Pte3g00616 203 Gene3D - 107 203 - -
Pte3g00616 203 ProSiteProfiles PB1 domain profile. 110 202 IPR000270 GO:0005515
Pte3g00616 203 Pfam AUX/IAA family 88 200 IPR033389 -
Pte3g00616 203 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00616 Pte-Chr3 4841184 4842541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00616 113 197 B3 DNA Binding Superfamily AT2G46530 38.824 1.44e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Pte3g00616 AUX_IAA 2.1e-33 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00616 K14484 - gmx:100527448 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00616 3 4841184 4842541 Pte3g00616 3 4841184 4842541 RCT