Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00610 ATGGCTGAGGAGATAAACGATATTTTTACAGAAGAGATTACACTACCTATAAGTCGTGCAATACTTGTGAATTTTTCTGCAAACAGTGGAAGAGACTTGGAGGAGAAACAAGATGCAGTAAACAAGGGCAATAATAGCCAACAGAACACAAACACAGTACCGTTTTATAAGCTGTTCTCTTTTGCCGACAGTGTGGACTATGCGTTGATGTTTGTTGGGGCAATAGCTGCAGCTGGGACAGGGATCTCCGTACCTATAATGACTGTAATATTTGGAGAAGTAGTTGATGCATTTGGAGGAACCTCAAACCTCATAGCTAAAGGTGAAATTCCCAAGGTGTCTCTAGAGTTCGCATGCTTGGCTCTGGCTTCCTCTGTTGCATCTTTTCTTCAGATGACATGTTGGATAGTTACTGGCCAGAGGCAAGCTGCAAGGATAAGAAAATTGTACCTAAAAGCAACTTTGAGACAAGATATAGGCTTCTTTGATACACAAATCAGTACTGGTGAGATTATTGGAAGGATGTCAGGTGACACAGTTCTTATCCAAGATGCCATGGGCGAGAAGGTTGGGCAGTTTATACTTTTTGTGGTCGCATTTCTAGGAGGCTTTGTAGTGGCCTTTACCAAAGGGTGGCATTTAACCTTGGTCCTTCTATCCTCTATCCCACCTCTTGTCTTAGCTGCTGCTTTGATGAGCATTCTCATAGCTAAGTTGGCTAGCCGTGGACAAGATGCTTATTCAGAGGCAGCCATTGTTGTAGAACAGACGATTAGTTCAATTAGAACCATGGCATCATTTACAGGGGAGAAACTAGCTATATCTAAATATCTCCAATCAATCACAAAAGCTTACAAAATTGGGTTACAAGAGGGACTGGCTACTGGTTTGCTTACGGGTATAGTTGCCTTCGTAGCATTCTGTAGCTGTTCTTCGGCTGCATGGTATGGTAGGAAGATGGTACTACATAAAGGATACACTGGGGGAGATATTATAACTATCATCTCGGCAATTCTGCACGGCTCTGTGAGCTTGGGGCTGGCAGCTCCATGCTTGAATGTGTTCGGAGCAGGACAAGCTGCTGCATTTAAAATGTTCAAAGTAATTGAGAGAGAGCCTTTGTTTGATGTTTATGAAAGTAGAGGGAAGCAACTAGATGGCATTCGTGGGGATATAGAACTAAAGGGGGTCTACTTTAGCTATCCTGCAAGGCCTGATGAACAAATACTCAGTGGACTTTCTCTTTCCATACCAAGTGATACTACTGCTGCTTTGGTTGGACAAAGTGGGAGTGGAAAATCTACAGTCATTAGTTTAATCGAGAGATTTTATGATCCACAAGTTGGTGAAGTTCTTATTGATGGCATAAATCTGAAAGAGTTTCAGTTGAAATGGATAAGAAAGAAAATAGGCCTCCTGAGCCAGGAAACTGTGCTGTTCAATGCCAGGATTAAAGATAACATTGCATATGGAAAAGAAGGTGCAACCGATGAAGAAATCAGAGCTGCAATGGAACTAGCAATTGCTGATATATTTATAGATAAACTTCCCGAGGGATGGGACACCGTGGTTGGTGAGCATGGGACTCAACTCTCAGAAGGAGAAAAGAGACGAATTGCTATAGCAAGAGTTATTCTAAAGGATCCTAGAATTCTACTTCTAGACGAGGCTATAACTGCTCTTGACGCTGAATCTGACAGGTTAGTCCAAGAATCATTGGACAAATTTATGATCAACCGGACTACTGTAATTGTAGCCCACTGGTTAAGTACCGCTAGAAATGCTGATATGATTGCAGTCATCCATCAAGGGGAAGTAGTTGAAAAGGGTTCACATGTTGAGCTCATCAAGGATGCTGATGGAGCTTACAGCCGACTCATTAGGTTACAACAGACCAACATAGCAAAAAATGCTGTTTGTGATCAGAACTCCCCAGAAGTTGGGATAAACTATAAAAGTGTTTTTGATCAATTTAATTCCTTGTTGGAACCTAGCAAGGGCTCATATGAAAGTGGAATCAACAATGGCTCAACCATTTCAAATGGAGTGTCCACTGCCGTTAGAGTAACAGAAGCACTAAGTGCAGATCTCGAGACTTCAAAACTTGCATCACTTAGACCTCATCAAGAAGTTCCTCTCTATAGGCTTGCATATCTTAACAAGCCTGAATTCCCTATATTAATTTTGGCAATTTTAGCAGCAATAGCAAATGGAGCTATTTTACCTGTTTTTGGATTGTTATTCTCCAAAATGATAAGAACATTCTATGAGCCTGTTGATGATCTTCAAAAAGATTCAAAACTTTGGTCAAAATACTTTCTAATCCATGCCACTGCTTCTCTAGTTATTTATGCCTTGAGGAACTATCTGTTTGCTGCAGCAGGTCACAGATTGATAAGAAGAATAAGAAGAATGTGCTTTGAGAAAGTGATTCACATGCACATAAGCTGGTTTGATGAAATTGGGCACTCAACTGGAGTGATTGGTGCAATGCTTTCTTCAGATGCAGCTACGATACGAGGTTTTGTTGGAGATGCGCTTGGCTTATTGGTTCAAAATGCTTCTAGTGCAATTATAGGTCTGGTAATTGCTTTCACAGCAAACTGGAAGCTTGCCCTTATATTTCTTGCTTCGCTTCATGTACTCGGGGTCAGTGTATATGTTCAACTGGAAGTTATAAAAGGGTTCAGCTTAAATGCAAAGAAATTGTATGTGGAAGCTACCGAAGTGGCAAGTGACGCAGTTGGGAGTATTAGAACGGTAGCTTCTTTTTGTGCCGAGGAGAAGATGCTGGATATATACGACAAGAAATGTGAAGGCTCGAGGAAGACAGGATTGAAGCAAGGAGTTACCTGTGGTGTAGGCTTTGGGCTATCCAATTTTTTGTTGTATGCTTTATATTCCTTGACCTTTTATGCTGCAGCTAGACTTGTTGACAATGGGAAGGCAACATTTTCTGATATCTTCGTAGTTTTCTTTGGACTAACGATGGCTGCTCTGTCAGTGTCTCAATCTGGTTCCTTGATCCCTAATACAATCAAAGGGAAGACTTCTGCAGCTTCCATATTTGCTATTCTTGACCAAAAATCCAAAATAGACTCTAGTGATGAGTCAGGAGTGACATTGGAGCATGTCAAGGGTGACTTGGAGTTTTGCGATGTTAGTTTCAGTTACCCCTCTAGATCTGATAAGTACATATTCAAACATATGTGTCTGGCTGTTCCTTCTGGCAAGACTATAGCCCTAGTGGGAGAAAGCGGAAGTGGCAAGTCGACAGTCATCTCATTAATGCAAAGATTCTATGACCCTAATTCTGGTAAAATTACACTTGATGGAATAGAGATTCGAAACCTACAACTTAAATGGTTAAGACAGCAGATGGGGCTTGTGAGTCATAAGCCTGTGTTGTTTCACGATACCGTTCGAGCAAACATTGCATATGGGAAAGATGGCAACGCAACTGAAGCTGAAATTTTAGCAGCAGCAAAAGTGGCAAATGCTCACAAATTTATCAGTGCTCTGCAAGATGGATATGACACCGTTATAGGTGAGAGGGGAGTTCAACTTTCTGAAGGACAAAAGCAGAGAGTGGCCATTGCACGTGCAACTGTGAAAAATCCAAAGATGTTACTTCTGGATGAAGCAACCAGTGCCCTTGATGAAGAGTCTGAAAAAAATGTTCAAGAAGCATTAGAGAAACTCATGGTTGATAGGACCACAATTGTGGTGGCTCGTCGGCTGTCCACAATCAAAGGTGTTGATATGATAGCAGTGGTTCACAAGGGAGTGATTACTGAAATGGAAAGCTTCCAAGAAACTTCATTGTTGAAATTTGAAGCACGAAAATCTAATGCAAACCAACATGGTATATGTGCTTCTTTAGTAGCGTCCCTTACAAGTGATTTGCCGTCCTAA 3915 0.4133 MAEEINDIFTEEITLPISRAILVNFSANSGRDLEEKQDAVNKGNNSQQNTNTVPFYKLFSFADSVDYALMFVGAIAAAGTGISVPIMTVIFGEVVDAFGGTSNLIAKGEIPKVSLEFACLALASSVASFLQMTCWIVTGQRQAARIRKLYLKATLRQDIGFFDTQISTGEIIGRMSGDTVLIQDAMGEKVGQFILFVVAFLGGFVVAFTKGWHLTLVLLSSIPPLVLAAALMSILIAKLASRGQDAYSEAAIVVEQTISSIRTMASFTGEKLAISKYLQSITKAYKIGLQEGLATGLLTGIVAFVAFCSCSSAAWYGRKMVLHKGYTGGDIITIISAILHGSVSLGLAAPCLNVFGAGQAAAFKMFKVIEREPLFDVYESRGKQLDGIRGDIELKGVYFSYPARPDEQILSGLSLSIPSDTTAALVGQSGSGKSTVISLIERFYDPQVGEVLIDGINLKEFQLKWIRKKIGLLSQETVLFNARIKDNIAYGKEGATDEEIRAAMELAIADIFIDKLPEGWDTVVGEHGTQLSEGEKRRIAIARVILKDPRILLLDEAITALDAESDRLVQESLDKFMINRTTVIVAHWLSTARNADMIAVIHQGEVVEKGSHVELIKDADGAYSRLIRLQQTNIAKNAVCDQNSPEVGINYKSVFDQFNSLLEPSKGSYESGINNGSTISNGVSTAVRVTEALSADLETSKLASLRPHQEVPLYRLAYLNKPEFPILILAILAAIANGAILPVFGLLFSKMIRTFYEPVDDLQKDSKLWSKYFLIHATASLVIYALRNYLFAAAGHRLIRRIRRMCFEKVIHMHISWFDEIGHSTGVIGAMLSSDAATIRGFVGDALGLLVQNASSAIIGLVIAFTANWKLALIFLASLHVLGVSVYVQLEVIKGFSLNAKKLYVEATEVASDAVGSIRTVASFCAEEKMLDIYDKKCEGSRKTGLKQGVTCGVGFGLSNFLLYALYSLTFYAAARLVDNGKATFSDIFVVFFGLTMAALSVSQSGSLIPNTIKGKTSAASIFAILDQKSKIDSSDESGVTLEHVKGDLEFCDVSFSYPSRSDKYIFKHMCLAVPSGKTIALVGESGSGKSTVISLMQRFYDPNSGKITLDGIEIRNLQLKWLRQQMGLVSHKPVLFHDTVRANIAYGKDGNATEAEILAAAKVANAHKFISALQDGYDTVIGERGVQLSEGQKQRVAIARATVKNPKMLLLDEATSALDEESEKNVQEALEKLMVDRTTIVVARRLSTIKGVDMIAVVHKGVITEMESFQETSLLKFEARKSNANQHGICASLVASLTSDLPS* 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00610 1304 Pfam ABC transporter 1068 1217 IPR003439 GO:0005524
Pte3g00610 1304 FunFam ABC transporter B family member 1 707 1015 - -
Pte3g00610 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 385 630 IPR027417 -
Pte3g00610 1304 Gene3D ABC transporter type 1, transmembrane domain 904 1038 IPR036640 GO:0005524|GO:0016020
Pte3g00610 1304 FunFam ABC transporter B family member 1 382 631 - -
Pte3g00610 1304 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 71 357 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte3g00610 1304 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 392 628 IPR003439 GO:0005524
Pte3g00610 1304 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1049 1286 IPR003439 GO:0005524
Pte3g00610 1304 Gene3D ABC transporter type 1, transmembrane domain 670 848 IPR036640 GO:0005524|GO:0016020
Pte3g00610 1304 PANTHER ABC TRANSPORTER B FAMILY 34 632 IPR039421 -
Pte3g00610 1304 SMART AAA_5 1076 1279 IPR003593 GO:0016887
Pte3g00610 1304 SMART AAA_5 419 605 IPR003593 GO:0016887
Pte3g00610 1304 FunFam ABC transporter B family member 1 1039 1283 - -
Pte3g00610 1304 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1038 1272 IPR027417 -
Pte3g00610 1304 SUPERFAMILY ABC transporter transmembrane region 57 376 IPR036640 GO:0005524|GO:0016020
Pte3g00610 1304 Pfam ABC transporter transmembrane region 727 999 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte3g00610 1304 Pfam ABC transporter transmembrane region 70 337 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte3g00610 1304 CDD ABC_MTABC3_MDL1_MDL2 1050 1295 - -
Pte3g00610 1304 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 728 1014 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte3g00610 1304 CDD ABC_6TM_Pgp_ABCB1_D2_like 717 1032 - -
Pte3g00610 1304 Gene3D - 1039 1272 IPR027417 -
Pte3g00610 1304 Gene3D - 382 631 IPR027417 -
Pte3g00610 1304 Gene3D ABC transporter type 1, transmembrane domain 57 646 IPR036640 GO:0005524|GO:0016020
Pte3g00610 1304 SUPERFAMILY ABC transporter transmembrane region 715 1029 IPR036640 GO:0005524|GO:0016020
Pte3g00610 1304 Pfam ABC transporter 410 558 IPR003439 GO:0005524
Pte3g00610 1304 FunFam ABC transporter B family member 9 1016 1038 - -
Pte3g00610 1304 CDD ABC_6TM_Pgp_ABCB1_D1_like 70 365 - -
Pte3g00610 1304 CDD ABC_MTABC3_MDL1_MDL2 392 630 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00610 Pte-Chr3 4804847 4810004 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00610 55 631 Calmodulin-binding Proteins AT2G36910 35.434 3.96e-92 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00610 K05658 - cave:132167639 1583.93