Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00609 ATGATCAACCGAACTACAGTAATTGTAGCTCACCGCTTAAGTACCATTAGGAATGCTGACATGATTGCAGTTGTCCATCATGGAAAAATTATTGAAAAAGGTTCACACATTGAGCTCACGGAGAATACTGATGGAGCCTATAGCCGACTCATTATGCTACAACAGATGAACTCAACCTCAGTAGAAAATGTTCCAAATGAAGGTTCAGAACACAAAGGCAGCTCAAGGAGACACCCAAGTCGATCAAATTTCTTGTTACAATCTGAAGGAAGGGAATCGCCTGGAACTAAAAACAATGAATTGTCCACCGTGGGTCGCACAATAGAAACAGTTCGTGCAGATCTTAAAACTTTTGAAACATCATCTCCAAGACTACATCAAGATTTTATTCTCCATAGGCTTGCTTATCTTAATAAGCCTGAAGTTCCAGTACTATTCATGGCAGCCCTAGCAGCAATGGCAAATGGAGCTGTATTACCGATTTTTGGATTATTATTCTCCATTATGACAAGAACGTTCTACGAGCCTGTTGATATACTAAGAAGAGATTCAGAAGTTTGGGCAAAAACCTTTCTGCTTCTCGCTGCTGTATCTTTTGTCATTTATCCTTTGAAGAAGTATCTTTTTGCTGTAGCTGGTTCCAGGTTGATAAGACGAATAAGGCACATGATATTTGAGAAAGTTGTTTACATGGAAATAAGTTGGTTTGATGAAATGGAACACTCAACAGGAGTAATTTGTTCCATGCTTTCTACAGATGCAGCTAACTTACGAGGTTTAGTTGGAGATGCACTAGGTTTACTGGTACAAAATATATCTACTACAATCATAGGATTGGTAATTGCTTTCATGGCAAATTGGCAACTTTCTCTTGTAGTTCTTCTTATGCTTCCTTTACTGGGGGTCAACGGATATGTTCAATTACAAGTTTTGAAAGGGTTCAGCGCAAAAGCAAAGAAATTATACGTGGAAGCTACTCAGGTGGCAAATGATGCAGTAGGGAGTATTAGGACAGTGGCTTCTTTTTGTGCCGAAGAGAAGGTGCTAGATTTATACTACAGGAAATGTCAAGGCCCAATTAAAACAGGAACCAGGCAAGCCTTACTTAGTGGAGTAGGCTTTGGGCTGTCCAATCTCGTCCTGTATGCTGTATACTCTTTGATCTTTTATGCTGCAGCTCGACTTGTTGAGGATGGCAAGGCAACATTTTCAGACGTGTTCCGTGTTTTCTTCGCACTCACTATGGCAGCTCTGTCAATCTCACAATCAGGTACCTTTGTCCCTGATACAAATAGAGCACAGAGTTCTGCAGCTTCCATATTTGCTATCCTTGACCAAAACTCAAAAACCGACTCGAGTGATGAGTCAGGAATCAAACTAGAACATGTTGAGGGGCACTTGGAATTTCGGCATGTTAGTTTCGTCTATCCTGTTAGGCCTGATGTTCAAATATTCAGAGATCTTTGCCTGGTTATTCCTTCGGGAAAGACAGTAGCCCTTGTGGGAGAAAGCGGGAGTGGCAAATCGACAGTCATTTCATTACTGCAAAGGTTCTATGATCCCAGTTCAGGTCAAATTACACTGGATGGAATGGAGATTCAAAAACTACAACTCAAGTGGCTAAGGAAACAGATGGGGCTTGTGAGCCAGGAGCCTTCGTTGTTTAACGACACAATTCGTGCAAACATTGCATATGGAAAAGGAGGCAACGTTGCAACAGAAGCTGAAATCTTGGAGGCCGCAGAATTAGCAAATGCTCACAGATTTATCAGTGCTTTACAAAGTGTAATATAA 1794 0.4103 MINRTTVIVAHRLSTIRNADMIAVVHHGKIIEKGSHIELTENTDGAYSRLIMLQQMNSTSVENVPNEGSEHKGSSRRHPSRSNFLLQSEGRESPGTKNNELSTVGRTIETVRADLKTFETSSPRLHQDFILHRLAYLNKPEVPVLFMAALAAMANGAVLPIFGLLFSIMTRTFYEPVDILRRDSEVWAKTFLLLAAVSFVIYPLKKYLFAVAGSRLIRRIRHMIFEKVVYMEISWFDEMEHSTGVICSMLSTDAANLRGLVGDALGLLVQNISTTIIGLVIAFMANWQLSLVVLLMLPLLGVNGYVQLQVLKGFSAKAKKLYVEATQVANDAVGSIRTVASFCAEEKVLDLYYRKCQGPIKTGTRQALLSGVGFGLSNLVLYAVYSLIFYAAARLVEDGKATFSDVFRVFFALTMAALSISQSGTFVPDTNRAQSSAASIFAILDQNSKTDSSDESGIKLEHVEGHLEFRHVSFVYPVRPDVQIFRDLCLVIPSGKTVALVGESGSGKSTVISLLQRFYDPSSGQITLDGMEIQKLQLKWLRKQMGLVSQEPSLFNDTIRANIAYGKGGNVATEAEILEAAELANAHRFISALQSVI* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00609 597 FunFam Cullin-associated NEDD8-dissociated protein 1 457 542 - -
Pte3g00609 597 Pfam ABC transporter 488 579 IPR003439 GO:0005524
Pte3g00609 597 Gene3D ABC transporter type 1, transmembrane domain 96 431 IPR036640 GO:0005524|GO:0016020
Pte3g00609 597 MobiDBLite consensus disorder prediction 60 103 - -
Pte3g00609 597 Pfam ABC transporter transmembrane region 145 417 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte3g00609 597 CDD ABC_6TM_Pgp_ABCB1_D2_like 135 449 - -
Pte3g00609 597 Gene3D - 457 594 IPR027417 -
Pte3g00609 597 PANTHER ABC TRANSPORTER B FAMILY 1 56 IPR039421 -
Pte3g00609 597 MobiDBLite consensus disorder prediction 79 103 - -
Pte3g00609 597 SUPERFAMILY ABC transporter transmembrane region 133 446 IPR036640 GO:0005524|GO:0016020
Pte3g00609 597 Gene3D ABC transporter type 1, transmembrane domain 432 456 IPR036640 GO:0005524|GO:0016020
Pte3g00609 597 Gene3D - 3 94 IPR027417 -
Pte3g00609 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 54 IPR027417 -
Pte3g00609 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 593 IPR027417 -
Pte3g00609 597 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 146 432 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pte3g00609 597 FunFam ABC transporter B family member 1 126 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00609 Pte-Chr3 4798978 4801339 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00609 4 61 Calmodulin-binding Proteins AT2G36910 55.932 1.26e-12 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00609 K05658 - qsa:O6P43_021947 739.569