LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g00608	ATGGCTGAAAATAAGACTGCGGACAATTCTATTGAGGAGATTACGAGGGCAGGTCAGCAAAAGCTTATTCATGGTCCTGGAGACAATGAAAGAGTCTTGCATGAGAAGCAAAATGCAACGAAGGAGAGGAAGAGTAAACAGGAGATCACAAAGAAAGTATCCTTTTATAAGTTATTCTCCTTTGCTGACTCAGTAGACTATGTGTTGATGTTTGTTGGAGCAATGGGTGCTGCTGGGACTGGGATATGTCTACCCGTGATGACTGTACTTTTTGGAGAAGTTGTTGATGCGTTTGGAGGAAGCACAAACCCCAAAAGTGTTAGAAGGGAAGTTTCCAAGGTTGGGCAGTTTATACAATATGTGGTCACATTTCTAGGAGGCTTTGTAATTGCATTTACCAAAGGGTGGCTTCTAACCTTGGTCCTGCTATCCTCTATCCCACCTCTTATCTTAGCTGCTGCTTTGATGAGCATTCTCATAGCTAAGTTGGCAAGCGGTGGACAAGATGCTTATTCAGAGGCAGCCATTGTTGTAGAACAGACAATTAATTCTATGAAAACCGTTGCATCATTTACAGGAGAGCAGCTAGCTATATCTAAATACATCCAAGCAATTACAAAAGCATACAAAAATGGAGTGCACGAAGGTCTGGTAACCGGTTTGTGTGTGGGTATGGTAGTCTTTGTAGTATTCAGTACTTCTTCTTTGGCTACATGGTACGGTGGGAAGATGGTACTACATAAAGGGTACACAGGTGGAGATATCATAACGATCATCTTGGCAATTTTGAGTGGCTCCGTGAACTTGGGGCTGGCATCTCCAAGCATCAGTGCATTTGCAGCTGGACAAGCTGCGGCATTTAAAATGTTTGAAACCATCAAGAGAAAACCTTTGATTGACGCTTACGACAGTAGAGGGCAACAATTGGATGACCTTCGTGGGGATATAGAACTCAAGGAGGTCTACTTTAGTTATCCTGCGAGACCTGAAGAACAAATACTTGGGGGATTTTCTCTCTCCATACGATGTGGTGCTACAGCTGCTTTGGTTGGACAAAGTGGGAGTGGAAAATCTACAGTCATCAGTTTAATTGAGAGGTTTTATGATCCACAAGGTGGAGCAGTTCTAATTGATGGTATAAATCTGAAAGAGTTTCAGTTGAAATGGATTAGACAGAAAATAGGCCTCGTCAGCCAGGAACCAGTGCTATTCACTTCCAGCATGAAAGATAATATTGCATATGGAAAAGAAGGTGCGACCATTGAAGAAATCACAACTGCAGCGGAGCTAGCACATGCTGCTGAATTCATAAAGAAACTTCCCCAGGTTAGTGCTGGCTGGTTTTTGAAATTGACGTTTGATTCATATTCATCTACAATATAA	1383	0.4223	MAENKTADNSIEEITRAGQQKLIHGPGDNERVLHEKQNATKERKSKQEITKKVSFYKLFSFADSVDYVLMFVGAMGAAGTGICLPVMTVLFGEVVDAFGGSTNPKSVRREVSKVGQFIQYVVTFLGGFVIAFTKGWLLTLVLLSSIPPLILAAALMSILIAKLASGGQDAYSEAAIVVEQTINSMKTVASFTGEQLAISKYIQAITKAYKNGVHEGLVTGLCVGMVVFVVFSTSSLATWYGGKMVLHKGYTGGDIITIILAILSGSVNLGLASPSISAFAAGQAAAFKMFETIKRKPLIDAYDSRGQQLDDLRGDIELKEVYFSYPARPEEQILGGFSLSIRCGATAALVGQSGSGKSTVISLIERFYDPQGGAVLIDGINLKEFQLKWIRQKIGLVSQEPVLFTSSMKDNIAYGKEGATIEEITTAAELAHAAEFIKKLPQVSAGWFLKLTFDSYSSTI*	461

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte3g00608	460	Gene3D	-	306	442	IPR027417	-
	Pte3g00608	460	PANTHER	ABC TRANSPORTER B FAMILY	35	104	IPR039421	-
	Pte3g00608	460	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	308	442	IPR027417	-
	Pte3g00608	460	CDD	ABC_6TM_Pgp_ABCB1_D1_like	70	277	-	-
	Pte3g00608	460	ProSiteProfiles	ABC transporter integral membrane type-1 fused domain profile.	112	281	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Pte3g00608	460	SUPERFAMILY	ABC transporter transmembrane region	52	300	IPR036640	GO:0005524\|GO:0016020
	Pte3g00608	460	Gene3D	ABC transporter type 1, transmembrane domain	113	305	IPR036640	GO:0005524\|GO:0016020
	Pte3g00608	460	Gene3D	ABC transporter type 1, transmembrane domain	49	111	IPR036640	GO:0005524\|GO:0016020
	Pte3g00608	460	Pfam	ABC transporter transmembrane region	112	266	IPR011527	GO:0005524\|GO:0016020\|GO:0055085\|GO:0140359
	Pte3g00608	460	Pfam	ABC transporter	336	446	IPR003439	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g00608	Pte-Chr3	4796661	4798864	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte3g00608	112	442	Calmodulin-binding Proteins	AT2G36910	34.808	2.99e-51	185

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g00608	K05658		-	cave:132167639	456.832