Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00557 ATGGCTTCAGGCAGCAGAGCTGGAATTCTAGCTCACAAAGCACAGTCTTCAGGCACTCAGAATGCTCGTCTTCGTAACAGCGAGTCTAGTCATTGCCTTTGCGAAAACGCCAGAGAGATGTTGGGTATTACCCCACAGTCAGTTCCCTCTCTTGAAAAGCCTGAAATCTTAACAATTGGGACGGATGTCCGTGCACTTTTCACACCCTCAAGTGCAGTTCTACTTGAGAAGGCATTTGATGCTCGTGAAATTGCCTTACTGAATCCGGTTTGGATTCATTCTAAGAATTCGGGGAAGGCCTTTTATGCTATTTTGCATAGGATTGACGTGGGAATTCTGATTGATTTGGAGCCTGCGAGGACAGAGGACCCTGCTCTTTCAATTGCCGGGGCTGTGAAGTCACAGAAGCTGGCTGTTCGAGCAATTTCGCGCCTGCAGTCGCTTCCTGGTGGTGACATTAACCTTTTGTGCGACACTGTGGTAGAGTGTGTTAGAGAACTTACTGGTTATGATAGAGTGATGGTGTATAAGTTCCACGAGGATGAGCACGGGGAGGTTGTTGCTGAGAGTAAGAGGCCAGATTTGGAACCATACATTGGATTGCATTATCCTGCAACTGATATTCCTCAAGCATCTAGATTTTTGTTCAAGCAGAATAGGGTCAGGATGATTGTAGATTGCAGAGCAACGTCAGTTAAGTACATGGCCAACATGGGCTCAATGGCCTCACTGGTACTGGCGGTTATAATCAATGGAAACGATGAGGATGCTGTTGGAAGCCACATTCCAATGAGGCTATGGGGCCTGGTTGTTTGTCATCATACATCACCTAGAAGCATTCCTTTTCCTCGACGGCATGCTTGTGAATTCCTCATGCAAGCATTTGGACTTCAACTTAATATGGAACTACAATTAGCCTCACAGTTAGAAGAGAAACGTGTTCTAAGGACCCAAACTCTCTTGTGCGATATGCTTCTTCGTGATTCACTTACTGGCATTGTTACTCAAAACCCAAGCATAATGGACCTTGTGAAGTGTGATGGTGCTGCGCTATACTACCAAGGAAACTACTACCGTTTGGGTGTAACCCCAACTGAATCGCAGATAAAGGACATTATTGATTGGTTGTTAGCTTTGCTTGGAGATTCAACAGGCTTAAGCACCGAAAGTTTGGCTGAGGCAGGATTTGCTGGTGCTGCCTCACTAGGCGAAGCAGTTTGTGGAATGGCTGTTGCATATATAACAAAAAGAGATTTTCTATTCTGGTTTAGATCCCACACAGCAGAAGAGATGAAATGGGGTGGTGCAAAACACCATCCAGAAGACAAGGATGATGCGCAGAAAATGCATCCCAGATCTTCATTCAAGGCATTTTTGGAAGTGATTAAGAGACGTAGTTTGCCATGGGAGAATGCAGAAATGGATGCTATTCATTCCTTGCAGCTTATTCTGCGAGACTCATTTAGAGAAGATCAAAGCAATTCAAATGCTATTATAAGTCATAAGATGGGGGATCTAGAGTTGCATGGTGTGGATGAGCTAAGCTCCGTGGCAAGAGAAATGGTTAGGTTGATTGAGACTGCAACTGTTCCCATATTTGCCGTAGATGTTGAAGGCTGCATAAATGGATGGAATGCCAAGATTGCCGAATTGACAGGTCTTCCAGTTGAGGAAGCTATGGGGAAGTCTTTATCACATGATCTTGTGCATAGAGAGTCTGAAGAAACTGTGGAAAAGCTTCTTTCTCATGCTTTAAGAGGTGAGGAAGATAAGAATGTTGAGATAAAGCTGAAGACATTCCGGGCAGAAAATCACAAGAGGGCAGTTTATGTCGTTGGGAATGCCTGCTCCAGCAAGGATTATTTGAATAATATAGTCGGGATATGCTTTGTGGGTCAGGATGTTACCAGTCAGAAAATCATAATGGACAAGTTTGTCCACATACAAGGAGATTACAAGACCATTGTCCACAGTCCAAATCCTTTGATTCCTCCAATATTTGCTTCAGATAATAATGCCTGTTGCTACAATGTCATGGAAAAGCTCACAGGCTGGACCTGTGAAGAGGTTCTAGGAAAGATGCTGGTTGGGGAGGTATTTGGAAGTTGCTGTCGATTGAAGGGACCGGATGCTCTAACCACATTCATGATTGTTTTGCACAATGCAATTGGTGGGCAAGACCTTGACAGATCTCCATTCTCATTCTATGATCGAAATGGAAAATTTATGCGTGCTCTCTTGACAGCAAACAAAAGAATTAATATGGACGGTCAGATAATTGGGGCTTTCTGCTTTTTGCAGATTGCTAGTCCTGAACTGCAGCAAGCCCTCAAAGTTCAGAGGGAACAGGGCAATAAATGCTTTGCAATGATGAAGGAGTTGACTTATATTTTCCGGGAAATAAAGAATCCCCTGAATGGAATACGATTTACAAACTCTCTTTTAGAGGCTACCGAACTGACTGATGATCAAAGGCAATTTCTTGAGACGAGCACTGCTTGTGAGAAGCAGATGCTGAAGATTCTTAAAGATATTGATCTTGAGAGAATTGAAGATGGGTCATTGGAGCTTGAAAAGGCAGAGTTCTTGCTTGGAAGTGCCATAAATGCTGTTGCAAGCCAAGTAATGCTGTTGCTTAGAGAGAGAGATTTACAATTGATTCGTGATATACCTGAAGAAATCAAGACATTAGCAGTTTACGGTGATCAAGTGAGAATCCAGCAAGTTTTAGCTGATTTTTTACTAAATATGGTCCGCTGTGCGCCATCACCAGATGGATGGGTAGAGATTCATGTGCATCCAATCTTAAAAAGAATTTCCGAGAGTTTCACTCTTATTCGCATTGAGTTCAGAGTTGTATGTCCGGGGGATGGTCTTCCTCCTGAACTGGTTCAAGATATGTTCCACAATAGCCATTGGATTACTCAAGAAGGTCTGGGGCTGAGCATGTGCAGGAAAATCCTAAAGCTCATGGGTGGCGATGTCCAATATATCAGGGAGTCAGAGATGTATTTTCTTAATTATACTTGA 3030 0.433 MASGSRAGILAHKAQSSGTQNARLRNSESSHCLCENAREMLGITPQSVPSLEKPEILTIGTDVRALFTPSSAVLLEKAFDAREIALLNPVWIHSKNSGKAFYAILHRIDVGILIDLEPARTEDPALSIAGAVKSQKLAVRAISRLQSLPGGDINLLCDTVVECVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCRATSVKYMANMGSMASLVLAVIINGNDEDAVGSHIPMRLWGLVVCHHTSPRSIPFPRRHACEFLMQAFGLQLNMELQLASQLEEKRVLRTQTLLCDMLLRDSLTGIVTQNPSIMDLVKCDGAALYYQGNYYRLGVTPTESQIKDIIDWLLALLGDSTGLSTESLAEAGFAGAASLGEAVCGMAVAYITKRDFLFWFRSHTAEEMKWGGAKHHPEDKDDAQKMHPRSSFKAFLEVIKRRSLPWENAEMDAIHSLQLILRDSFREDQSNSNAIISHKMGDLELHGVDELSSVAREMVRLIETATVPIFAVDVEGCINGWNAKIAELTGLPVEEAMGKSLSHDLVHRESEETVEKLLSHALRGEEDKNVEIKLKTFRAENHKRAVYVVGNACSSKDYLNNIVGICFVGQDVTSQKIIMDKFVHIQGDYKTIVHSPNPLIPPIFASDNNACCYNVMEKLTGWTCEEVLGKMLVGEVFGSCCRLKGPDALTTFMIVLHNAIGGQDLDRSPFSFYDRNGKFMRALLTANKRINMDGQIIGAFCFLQIASPELQQALKVQREQGNKCFAMMKELTYIFREIKNPLNGIRFTNSLLEATELTDDQRQFLETSTACEKQMLKILKDIDLERIEDGSLELEKAEFLLGSAINAVASQVMLLLRERDLQLIRDIPEEIKTLAVYGDQVRIQQVLADFLLNMVRCAPSPDGWVEIHVHPILKRISESFTLIRIEFRVVCPGDGLPPELVQDMFHNSHWITQEGLGLSMCRKILKLMGGDVQYIRESEMYFLNYT* 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00557 1009 FunFam Phytochrome 852 1008 - -
Pte3g00557 1009 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 791 853 IPR036097 GO:0000155|GO:0007165
Pte3g00557 1009 ProSiteProfiles Histidine kinase domain profile. 796 1009 IPR005467 -
Pte3g00557 1009 SUPERFAMILY GAF domain-like 311 489 - -
Pte3g00557 1009 FunFam Phytochrome 133 314 - -
Pte3g00557 1009 SUPERFAMILY PYP-like sensor domain (PAS domain) 34 122 IPR035965 -
Pte3g00557 1009 Gene3D - 133 226 IPR029016 -
Pte3g00557 1009 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 901 1000 IPR003594 -
Pte3g00557 1009 Pfam PAS fold 34 119 IPR013654 GO:0006355
Pte3g00557 1009 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 846 999 IPR036890 -
Pte3g00557 1009 SUPERFAMILY PYP-like sensor domain (PAS domain) 524 631 IPR035965 -
Pte3g00557 1009 FunFam Phytochrome 770 851 - -
Pte3g00557 1009 SUPERFAMILY PYP-like sensor domain (PAS domain) 678 766 IPR035965 -
Pte3g00557 1009 SMART HisKA_10 789 853 IPR003661 GO:0000155|GO:0007165
Pte3g00557 1009 CDD PAS 528 635 IPR000014 -
Pte3g00557 1009 MobiDBLite consensus disorder prediction 1 24 - -
Pte3g00557 1009 SMART HKATPase_4 901 1009 IPR003594 -
Pte3g00557 1009 Gene3D - 308 481 IPR043150 -
Pte3g00557 1009 FunFam Phytochrome 513 645 - -
Pte3g00557 1009 Pfam Phytochrome region 316 491 IPR013515 GO:0006355|GO:0009584
Pte3g00557 1009 CDD HATPase_Phy-like 900 1006 IPR044767 -
Pte3g00557 1009 Pfam PAS fold 520 635 IPR013767 GO:0006355
Pte3g00557 1009 Pfam PAS fold 651 767 IPR013767 GO:0006355
Pte3g00557 1009 Pfam GAF domain 152 303 IPR003018 GO:0005515
Pte3g00557 1009 NCBIfam PAS domain S-box protein 524 639 IPR000014 -
Pte3g00557 1009 FunFam Phytochrome 308 438 - -
Pte3g00557 1009 Gene3D PAS domain 515 639 - -
Pte3g00557 1009 Gene3D - 766 852 - -
Pte3g00557 1009 Gene3D PAS domain 33 231 - -
Pte3g00557 1009 SUPERFAMILY GAF domain-like 132 300 - -
Pte3g00557 1009 Gene3D - 232 464 IPR029016 -
Pte3g00557 1009 CDD HisKA 800 845 IPR003661 GO:0000155|GO:0007165
Pte3g00557 1009 MobiDBLite consensus disorder prediction 10 24 - -
Pte3g00557 1009 PANTHER OS08G0260000 PROTEIN 16 851 - -
Pte3g00557 1009 SMART pas_2 519 586 IPR000014 -
Pte3g00557 1009 Gene3D - 853 1005 IPR036890 -
Pte3g00557 1009 ProSiteProfiles PAS repeat profile. 517 588 IPR000014 -
Pte3g00557 1009 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 152 293 IPR016132 -
Pte3g00557 1009 PRINTS Phytochrome signature 67 89 IPR001294 GO:0006355|GO:0009584
Pte3g00557 1009 PRINTS Phytochrome signature 520 536 IPR001294 GO:0006355|GO:0009584
Pte3g00557 1009 PRINTS Phytochrome signature 167 186 IPR001294 GO:0006355|GO:0009584
Pte3g00557 1009 PRINTS Phytochrome signature 633 653 IPR001294 GO:0006355|GO:0009584
Pte3g00557 1009 PRINTS Phytochrome signature 451 469 IPR001294 GO:0006355|GO:0009584
Pte3g00557 1009 PRINTS Phytochrome signature 418 437 IPR001294 GO:0006355|GO:0009584
Pte3g00557 1009 PRINTS Phytochrome signature 539 554 IPR001294 GO:0006355|GO:0009584
Pte3g00557 1009 PRINTS Phytochrome signature 613 630 IPR001294 GO:0006355|GO:0009584
Pte3g00557 1009 SMART gaf_1 152 313 IPR003018 GO:0005515
Pte3g00557 1009 Pfam His Kinase A (phospho-acceptor) domain 796 853 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00557 Pte-Chr3 4352542 4358826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00557 35 1006 Histidine Kinase Gene Family AT4G16250 69.724 0.0 1457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00557 K12121 - tcc:18603656 1628.99