LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g00555	ATGTTCATGAATCGTGATCACCACCATTCCATAACAATGTTAACCAACGCGTATCTTCTTATATTCTGTATTTCATTAGCTGGCCTCTGTCTCGGTTACGAGCCTCGAAATCACGAAGTGGAAGCATTGATGAGCATAAAAAATGATTTGGTTGATCCACATGGGGTGTTAGGCAACTGGGATGGCGATTCAGTGGATCCTTGTAGCTGGGCTATGATCACTTGTTCATCTGAGAACCTTGTTGTTGGCCTTGGAGCTCCAAGTCAATCTCTCTCCGGAAAGCTATCTGCTGCCATCGGAAACCTCACTAACCTTCGACAAGTGTTACTGCAGAACAATAACATATCCGGAGAAATCCCATCTGAACTTGGAACATTCGATAAGCTTCAGACCTTAGACCTCTCTAATAACCAGTTATCTGGTGCGGTTCCTGCCTCTCTCAGTCAACTCAGTAGCCTCCAGTACCTGAGGCTGAATAACAATAGCCTTTCGGGTTCTTTCCCCGTGTCTCTGGCCAAAATCCCACAACTTGCTTTCTTGGACTTGTCCTATAACAATCTCAGTGGACCGATACCCAAAAATCCAGCCAGGACATTTAATGTTGTGGGCAACCCACTTATTTGTGGAACTAGCTCTGCTGCTGAAGGTTGTTCTGGATCAACATCAGTAATTCCTCTTTCCTTTCCTCTTGAATCATCATCAGGAAAACACGTGTCCAAAAGACTAGGAATTGCACTGGGAGTCAGCCTCAGTTTTGGTTGTCTCATATTATTTTCACTTGGGTTATTATGGTATAGAAAGAAAAAGCAAAAGAAATTTATCCTGCACATTAGTGGTAAGTGTTTAAATAAAACCAATAATGCAATATTTGGCGAAAAAGGTTATGCCCTTCACTTATGTTTTATATTTTGTACAGATAATCCTGAAGAGGGACTTGTGAGCTTAGGAAATCTCAAAAGTTTCAGTTTCAAGGAACTCCAACATGCCACAGACAATTTCAGCTGCAAGAACATACTCGGGGCTGGAGGTTTTGGCAATGTCTATAAAGGTAAGCTTTGCGATGGGACTCTGGTAGCTGTGAAAAGGTTGAAAGATGTTGCTGGAACAGCTGGAGAATCACAATTTCGAACTGAACTGGAGATGATCAGTTTGGCAGTTCATCGCAATTTACTTCGCTTAATTGGGTATTGTGCCACTCTCAATGAAAAGCTCCTCGTCTATCCTTACATGTCTAACGGCAGTGTGGCATCCAGGTTAAGAGGCAAACCTGTTCTGGACTGGAATACAAGAAAGGGGATAGCGATTGGAGCTGCAAGAGGTCTGGTATACTTGCACGAGCAATGCGATCCAAAGATAATACATAGAGATGTAAAGGCTGCCAACGTTCTTCTCGATGATTATTGTGAAGCAGTTGTAGGTGATTTTGGCCTAGCAAAACTTCTTGACCATGCTGATTCGCATGTCACGACTGCTGTTCGTGGCACTGTGGGGCATATTGCACCAGAGTACCTCTCTACTGGCCAATCATCTGAGAAAACTGATGTATTTGGATTTGGAATTCTCCTGCTGGAGCTTATTACTGGAATGAAAGCTCTCGAGTTTGGGAAAACAATGAATCAGAAAGGAGTTATGCTTGATTGGGTTAAGAAAGTTCTGCAAGAAAAGATATTTGAAGTGCTAGTGGACAAAGAGCTTAGGAGCAACTATGACCGCATTGAGGTGGGAGAGATGCTGCAAGTGGCCTTACTTTGTACTCAGTACTTGCCAGCCCACAGGCCGAAAATGTCCGAGGCGGTTAGAATGCTTGAAGGTGATGGCCTTGCTGAGAAATGGGCAGCTGCTCATAATCATAGCATGAACTTGTTTCATAGCCACAGTCCTGATTGTTCTTCCCGCACTCCCTCTGTTCCAAAACATGATGATCAACCTGCGGTGTTTGGTCTGGAAATGGATGAAGATGATGATGAGCGTTCTTTGGATTCCTATTCCATGGAGCTGTCTGGTCCAAGATAA	2013	0.4357	MFMNRDHHHSITMLTNAYLLIFCISLAGLCLGYEPRNHEVEALMSIKNDLVDPHGVLGNWDGDSVDPCSWAMITCSSENLVVGLGAPSQSLSGKLSAAIGNLTNLRQVLLQNNNISGEIPSELGTFDKLQTLDLSNNQLSGAVPASLSQLSSLQYLRLNNNSLSGSFPVSLAKIPQLAFLDLSYNNLSGPIPKNPARTFNVVGNPLICGTSSAAEGCSGSTSVIPLSFPLESSSGKHVSKRLGIALGVSLSFGCLILFSLGLLWYRKKKQKKFILHISGKCLNKTNNAIFGEKGYALHLCFIFCTDNPEEGLVSLGNLKSFSFKELQHATDNFSCKNILGAGGFGNVYKGKLCDGTLVAVKRLKDVAGTAGESQFRTELEMISLAVHRNLLRLIGYCATLNEKLLVYPYMSNGSVASRLRGKPVLDWNTRKGIAIGAARGLVYLHEQCDPKIIHRDVKAANVLLDDYCEAVVGDFGLAKLLDHADSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGMKALEFGKTMNQKGVMLDWVKKVLQEKIFEVLVDKELRSNYDRIEVGEMLQVALLCTQYLPAHRPKMSEAVRMLEGDGLAEKWAAAHNHSMNLFHSHSPDCSSRTPSVPKHDDQPAVFGLEMDEDDDERSLDSYSMELSGPR*	671

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte3g00555	670	Gene3D	Transferase(Phosphotransferase) domain 1	410	621	-	-
	Pte3g00555	670	Pfam	Leucine rich repeat N-terminal domain	37	76	IPR013210	-
	Pte3g00555	670	SMART	serkin_6	333	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte3g00555	670	PRINTS	Leucine-rich repeat signature	174	187	-	-
	Pte3g00555	670	PRINTS	Leucine-rich repeat signature	129	142	-	-
	Pte3g00555	670	Gene3D	Phosphorylase Kinase; domain 1	303	409	-	-
	Pte3g00555	670	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	36	220	-	-
	Pte3g00555	670	MobiDBLite	consensus disorder prediction	624	670	-	-
	Pte3g00555	670	Pfam	Protein tyrosine and serine/threonine kinase	335	602	IPR001245	GO:0004672\|GO:0006468
	Pte3g00555	670	Pfam	Leucine rich repeat	128	187	IPR001611	GO:0005515
	Pte3g00555	670	SUPERFAMILY	L domain-like	37	201	-	-
	Pte3g00555	670	FunFam	Somatic embryogenesis receptor kinase 1	302	409	-	-
	Pte3g00555	670	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	452	464	IPR008271	GO:0004672\|GO:0006468
	Pte3g00555	670	SUPERFAMILY	Protein kinase-like (PK-like)	314	603	IPR011009	-
	Pte3g00555	670	FunFam	Somatic embryogenesis receptor-like kinase 1	410	621	-	-
	Pte3g00555	670	ProSiteProfiles	Protein kinase domain profile.	333	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte3g00555	670	Gene3D	Ribonuclease Inhibitor	36	219	IPR032675	-
	Pte3g00555	670	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	19	613	-	-
	Pte3g00555	670	ProSitePatterns	Protein kinases ATP-binding region signature.	339	361	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g00555	Pte-Chr3	4329812	4335043	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte3g00555	17	671	Receptor kinase-like Gene Family	AT5G16000	61.840	0.0	777

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Pte3g00555		PK_Tyr_Ser-Thr	7.9e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g00555	-		-	fve:101302638	970.689