Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00548 ATGTTATCAACCATGGAAGCTGGCTCAGGACTTGTCACAGGTTCTCATAATGCACTGTTGGTCATCCAACACCATGAAGAGCTGAAGCCATTGAAGAATGCGGATGGGCCTGAGACCTGTGAAATATGTGGCGATGATGTGGGTTTCACTGTGGATGGAGAAATATTTGTGGCCTGTGATGAATGTGGATTCCCAGTTTGTAGACCATGCTATGAGTACGAGAGAAGAGAAGGCAGCCAGCTTTGCCCACAGTGCAAGACACGATACAAGCGCATCAAAGGGAGCCCTAGAGTGGTTGGAGACGAAGATGAAGAGGATGTGGATGATATTGAACAAGAATTCAAGATGCAGGATGAGCAGGACCTCCATCAGCATGCAGAAGATTTGCTGCATAGCAACAGAAGTGTCGCATCACCAACAACCAAAGAAAAGGTTAGATCACGTCATATTCTAATTACTTATCTGTCTTCTGCACTTCAATTCCTGCAACATTCTCTTCTCATTCATATGAATCGAAGGGTAGGAAAAGATATTATAGTAACTTGCATTGTGTTTCTCAACGAAGCAGGAAATGAGAGGTGGGATGAGAAAAAAGAGGGAGCGACGAAAGAAAGGATTAACAACTGGAAGTTGCAGCAAGGCAATATATGGTCTGAAACTGATTGCTCAGTTGTTCCTGAGAAGGCAATGGGAGAGGAAAGCAGGCAGCCACTCTCAAGAAAAATCCCAATAGCATCAGGCAAAATCAGCCCTTACAGAATGGTGGTTGCCATTCGACTAGTGGTTCTTGTTTTATTCCTCCAATACAGGGTCATGCACCCAGTACACAATGCTAAGGGAATATGGTTAACATCTGTGGTCTGTGAGATCTGGCTGGCACTGTCTTGGATCATTGATCAGCTTCCCAAATGGTTTCCAATTGATCGTCAGACATATCTTGAACGTCTTTCACTCAGGTACGAGCCAGAGAACAAACCCAATTTGCTTTCTCCAGTAGATATCTTTGTCAATACAGTGAACCCGATGAAGGAACCTCCTCTAGTCACAGCCAATACAATCCTTTCAATTTTGGCGATAGACTATCCAGTTGACAAGATTTCATGCTATGTTTCTGACGATGGAGCGTCCTTTCTTACATTTGAAGTTCTCTCAGAGACGGCAGAATTTTCAAGGAAGTGGGTGCCTTTCTGCAGGAAATACACAACAGAGCCCCGAGCACCAGAGAAGTACTTTTCTGAGAAGATGAATTATCTCAAAGACAAAGTCCACCCATCATTTGTGAAGGACCGCAGAACAATGAAGAGAGAATATGAAGAATTTAAGGTCAGGATCAATGCACTTGTAGCCAAAGCAATGAGAGTTCCTCAAGAAGGTTGGACTTTGAAAGATGGGACACCATGGCCAGGAAACAACGCTAAAGATCATCCGGGTATGATACAGGTATTTCTTGGTGATAGTGGAGAACCTGATGCTGAGGGAAATCGACTCCCACGTCTTGTCTATGTGTCTCGTGAGAAAAGACCAGGATTTCATCACTACAACAAGGCTGGCGCTTTGAATGCCTTGCTCCGTGTCTCCGCAGTTCTGACAAATGCTCCTTTCGTGCTGAACTTGGATTGCAATCATTACGTGAACAACAGTAAAGCTCTTAGGGAGGCAATGTGTTTCTTAATGGATCTACAAATAGGGAATCAGGTCTGCTTTGTCCAGTTTCCACTACGATTTGAAGGGATCGATAAGCATGATCGTTATGCCAACAGAAACACTGTCTTCTTTGATATTACTTTGAAAGGTCTAGATGGTATTCAGGGACCTACATACGTCGGTACAGGTTGTGTCTTCAGAAGACGAGCTTTATATGGTTATGAACCAAAGAAAGTTCCTAAGCGTTCAAAAATGGTATGCTGCCCATGTTTTGGAGCACGCAGAAAGCTTAGAGTACACTCCAAGCAAGGAGGAAATGGAGATGATTCAAGCATATTAGAAATTGAAGAAGAAAACCAGACGTTGATGTCAAACATGAATTTTGACTCAAAATATGGGAAGTCATCAGTTTTAGTGGCATCAACTTTGATTGAAGAGAATAGCATCCCTTCTACCTCAAGTCCAGAAGCTCTGCTTAAAGAAGCCATTCAAGTCATCAGCTGCGGCTATGAAGACAGAACTGAATGGGGGAATGAGATAGGTTGGATGTATGGGTCTATCACAGAGGATACTCTAACAGGTTTTAAGATGCATTGCCGTGGTTGGAGGTCGATTTACTGTATGCCAAAGAGACCTGCATTCGAGGGTACTGCTTCCATCAACTTGTCAGATCGACTTAACCAGGTACTTCAGGGCGCAATAGGCTCGATCGAGATCTTCTTCAGTACAAACTGTCCAGCAGTGTATGGTTGTAAGGAAGGAAAACTTAGATGGCTCCAACGGTTAGCCTACATCGGGAGAACCACCTATCCCTTCACTTCGCTACCACTGCTTATCTACTGTGTCCTTCCAGCTGTATGCTTGCTCACTGACAAATTCATCATGCCATCGATAAGCACTTTTGCAAGTCTTCTCTTTATTGCTCTGTTTATGTCCATCTTTGCTACTGGCATCCTTGAGATGAGATGGAGTGGGGTTAGCCTCGAAGAATGGTGGCGAGATGAGCAATTCTGGGTCATTGGCTCGGTGTCTGCGCACCTTTTTGCCATCGTGCAAGGTCTTGTGAAGGTTGTAACAGGAATTGATACGAACATTATGCTTACTTCCAATGCATCAAAGGATGAGAAGTTGGGAGAATTATACACCATCAAATGGACTGGCCTCCTTATCCCTCCAACCACTATAGTAATCATTAATATAGTAGGTATTGTAGCTGGAATAACAGATGCCATCAACAGTGGGGCGCAATCCTGGGGAGCCCTTCTTGGGAAACTCTTGTATTCTATCTGGGTTATTGTTCACTTGTACCCCTTCCTCAAAGGCCTCACAGGTCGGCAGAACCGAACTCCAACTCTTGTGATCATATGGTCAGTTCTACTGGCTTCTATCTTCTCTCTCCTTTGGGTAAGAATTGATCCATTCGTGCTAACAACTACTGGACCTGATGTCAAGCAATGTGGAATCAACTGCTGA 3117 0.4398 MLSTMEAGSGLVTGSHNALLVIQHHEELKPLKNADGPETCEICGDDVGFTVDGEIFVACDECGFPVCRPCYEYERREGSQLCPQCKTRYKRIKGSPRVVGDEDEEDVDDIEQEFKMQDEQDLHQHAEDLLHSNRSVASPTTKEKVRSRHILITYLSSALQFLQHSLLIHMNRRVGKDIIVTCIVFLNEAGNERWDEKKEGATKERINNWKLQQGNIWSETDCSVVPEKAMGEESRQPLSRKIPIASGKISPYRMVVAIRLVVLVLFLQYRVMHPVHNAKGIWLTSVVCEIWLALSWIIDQLPKWFPIDRQTYLERLSLRYEPENKPNLLSPVDIFVNTVNPMKEPPLVTANTILSILAIDYPVDKISCYVSDDGASFLTFEVLSETAEFSRKWVPFCRKYTTEPRAPEKYFSEKMNYLKDKVHPSFVKDRRTMKREYEEFKVRINALVAKAMRVPQEGWTLKDGTPWPGNNAKDHPGMIQVFLGDSGEPDAEGNRLPRLVYVSREKRPGFHHYNKAGALNALLRVSAVLTNAPFVLNLDCNHYVNNSKALREAMCFLMDLQIGNQVCFVQFPLRFEGIDKHDRYANRNTVFFDITLKGLDGIQGPTYVGTGCVFRRRALYGYEPKKVPKRSKMVCCPCFGARRKLRVHSKQGGNGDDSSILEIEEENQTLMSNMNFDSKYGKSSVLVASTLIEENSIPSTSSPEALLKEAIQVISCGYEDRTEWGNEIGWMYGSITEDTLTGFKMHCRGWRSIYCMPKRPAFEGTASINLSDRLNQVLQGAIGSIEIFFSTNCPAVYGCKEGKLRWLQRLAYIGRTTYPFTSLPLLIYCVLPAVCLLTDKFIMPSISTFASLLFIALFMSIFATGILEMRWSGVSLEEWWRDEQFWVIGSVSAHLFAIVQGLVKVVTGIDTNIMLTSNASKDEKLGELYTIKWTGLLIPPTTIVIINIVGIVAGITDAINSGAQSWGALLGKLLYSIWVIVHLYPFLKGLTGRQNRTPTLVIIWSVLLASIFSLLWVRIDPFVLTTTGPDVKQCGINC* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00548 1038 CDD mRING-HC-C4C4_CesA 38 88 - -
Pte3g00548 1038 SUPERFAMILY RING/U-box 27 108 - -
Pte3g00548 1038 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 450 624 IPR029044 -
Pte3g00548 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 22 113 IPR013083 -
Pte3g00548 1038 FunFam Cellulose synthase 449 623 - -
Pte3g00548 1038 ProSiteProfiles Zinc finger RING-type profile. 40 86 IPR001841 -
Pte3g00548 1038 FunFam Cellulose synthase 21 113 - -
Pte3g00548 1038 Pfam Cellulose synthase 332 1032 IPR005150 GO:0016020|GO:0016760|GO:0030244
Pte3g00548 1038 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 235 1005 - -
Pte3g00548 1038 Coils Coil 430 450 - -
Pte3g00548 1038 Pfam Zinc-binding RING-finger 29 107 IPR027934 -
Pte3g00548 1038 SUPERFAMILY Nucleotide-diphospho-sugar transferases 481 776 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00548 Pte-Chr3 4274159 4278998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00548 5 1039 Cell Wall Biosynthesis AT5G17420 68.295 0.0 1474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00548 K10999 - tcc:18589005 1524.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00548 3 4274159 4278998 Pte3g00548 3 4274159 4278998 RCT