Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00539 ATGGCAGACAACGAGAGCGTTAAAGCTCTCCAAGTCGATCGCTCAAAGAAACAGCAGTTTCACTTCCATGGCGGAAATGGAAATCAACAAGAGAAGGACGATGAGGAAGGAGAAGAGAGACAAGCTGATCGTAGAGTGCATTCCGGAAAATCGCAACTTGTGCAGTCAGAGAGTTCTCAACGACCTCAGTCTGGAGTTCGGTTGACAGAGGTTAAAATGCTTCAGGGTTTGGGGAATGATCAGAGTTCGTGTATGCAGGTGAGTAATACTGCAATGGAGTCCAAAGGCGAAGCTCAATTAAAGGAGCAAACAGGAGCACGTGACGGAGACACTGTGGTAATGTACGTAGTTGAGGTAGATCAAGCTCAAACACAAAGTCAAGTTCAGTTGTCTGTGTCGCCAACTCCCCTATCAGATCATAGTGCCTCAAGTCCAAAGGTCAATAGGTTCTGTTCAGAGGCAGACCAGAAAAGTCATTCTAATGATAAGATACTAACTCCAGTTTCTGTTGGAAAGAGACCAACTGTTGATGGATACAATTGGCGGAAGTATGGTCAGAAGCAAGTAAAGAGTCCTACAGGTTCTAGGAGCTATTATAGGTGTACAAATTCTGAATGTAGTGCAAAGAAGATTGAGTGCTGCAATCACTTAGGTCTTGTAATTGAGGTTGTTTACAGAAGTCATCATTCACATGATCCACCTAAGAAGGTTAACTCTAGTAAGGAAAGTAAGATCACGCCATCGAGTCTGCCGTTAATAGAAAACAGTGTCAGAGAACTTAGAACGCTTCATGGCATAGGTCCATCCCCTGCTTCAAAAGAAATTGTGTCTTCCAAAGAACTTGTCCAGCTGACTCCCTCCACCCCCGAAAGAAAAAAAAATGTTGACAATGGCGAAGCTAAGGGCAAAAAGGACCGTGTAAACAAGCTAGAGCTGAAAAGAAGAGCAAAGAAAGAAGACTTAACGTGCTCAGACACTGAAACAAAACCTGAAAAAAAACCAAAGTTTGTGGTGCATGCAATGGGTGATGCGGGGATAGCAGGTGATGGATATCGTTGGCGGAAGTATGGACAGAAAATGGTTAAAGGAAATCCTGAACCAAGAAACTATTATAGATGCACTTCAGCTGGATGTCCTGTGCGCAAGCAAATAGAAAGAGCTTTAGATAACACAAACGCCATCATGATAACATATAAGGGGGTACATGACCATGATATGCCAGTGCCAAAAAAGCGGCATGGACCTTCAAGGGAACCTCTGGTTGCAGCTGCTGTTCCTACTTCTTCAGTGAACAATTCGCAGCTCAAGAAATCCGAGACCAAAGAAAATCAAATATCTTCAACTCAACCGCCAGCGGAGAGTAACGCCAGGGACCTTGGAGGTGAGAAAGCGATGGAGTCGGCACGAACTCTTTTGAGCATTGGTTTTGAAATAAAACATTGCTAG 1446 0.4391 MADNESVKALQVDRSKKQQFHFHGGNGNQQEKDDEEGEERQADRRVHSGKSQLVQSESSQRPQSGVRLTEVKMLQGLGNDQSSCMQVSNTAMESKGEAQLKEQTGARDGDTVVMYVVEVDQAQTQSQVQLSVSPTPLSDHSASSPKVNRFCSEADQKSHSNDKILTPVSVGKRPTVDGYNWRKYGQKQVKSPTGSRSYYRCTNSECSAKKIECCNHLGLVIEVVYRSHHSHDPPKKVNSSKESKITPSSLPLIENSVRELRTLHGIGPSPASKEIVSSKELVQLTPSTPERKKNVDNGEAKGKKDRVNKLELKRRAKKEDLTCSDTETKPEKKPKFVVHAMGDAGIAGDGYRWRKYGQKMVKGNPEPRNYYRCTSAGCPVRKQIERALDNTNAIMITYKGVHDHDMPVPKKRHGPSREPLVAAAVPTSSVNNSQLKKSETKENQISSTQPPAESNARDLGGEKAMESARTLLSIGFEIKHC* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00539 481 MobiDBLite consensus disorder prediction 48 66 - -
Pte3g00539 481 ProSiteProfiles WRKY domain profile. 342 407 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 ProSiteProfiles WRKY domain profile. 177 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 MobiDBLite consensus disorder prediction 423 464 - -
Pte3g00539 481 MobiDBLite consensus disorder prediction 27 47 - -
Pte3g00539 481 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 103 442 IPR044810 GO:0003700
Pte3g00539 481 SMART WRKY_cls 175 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 SMART WRKY_cls 347 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 MobiDBLite consensus disorder prediction 425 454 - -
Pte3g00539 481 FunFam WRKY transcription factor 333 408 - -
Pte3g00539 481 MobiDBLite consensus disorder prediction 125 146 - -
Pte3g00539 481 Pfam WRKY DNA -binding domain 349 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 Pfam WRKY DNA -binding domain 177 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 Coils Coil 300 320 - -
Pte3g00539 481 SUPERFAMILY WRKY DNA-binding domain 174 234 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 MobiDBLite consensus disorder prediction 284 303 - -
Pte3g00539 481 Gene3D WRKY domain 162 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 Gene3D WRKY domain 333 408 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 SUPERFAMILY WRKY DNA-binding domain 340 407 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pte3g00539 481 MobiDBLite consensus disorder prediction 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00539 Pte-Chr3 4197559 4201742 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00539 75 482 WRKY Transcription Factor Family AT4G30935 47.575 1.43e-114 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pte3g00539 WRKY 1.1e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00539 - - qsa:O6P43_022193 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00539 3 4197559 4201742 Pte3g00539 3 4197559 4201742 RCT