Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00534 ATGGAGCCGTGTAGCAGAGAAATGCAAGGAATGAACTCCCTATTGAGCTCTTCTCAAATTTCAATTCAAGACCTTTGCGATAATCAGCTACAGCAGATGCAGAACCCTCAGATTCATGATCCGCTGCAGTCTGCTCATTTGGACACTACATCACATGACGATTTTCTCGAGCAAGTGCTTTCTACGCTTCCATCTTCCTCCTGGCCTGACCTCGCTGCTTCCAACCCAAAGCCGTTATGGGACCTCAATCCCGTCCATTTCAACGGCACTGGAAGTGTCAAGCTTTCTGACGAAACCACTGCGCTGTCAAGGGAGAATGTTGCTTTTCAGTTCGATGAGCAGGAGAACTTGGCGTCTAAGTTTCGGAACCATCCGATCACTGTCGGGTCACCTACGAGAAAACCTTCTGTTGAAGCCGCTGTCATGCTCCACCAGCAGCTTCTCATGTCCAGAGGTATGGCTGCTGCTGCTACAGGAAGTTCTGGCTCCGCTAGACACGGCGATGATTCCGGGATCCTTCACGTGCCGCTGTCGTTGGGTAATGGAGGTCAATTCGATCATCCTCAAAACGACGTAGTGGATGGATCAGCTTTTGTGTCACCTAATCCGGATAGCGACAATCCAGTTAGAACTCTGTACAACGGCCACAGTGGATATCCACATGGGAATCCTCAAGCTTCGAACCAGTCTCGTCCTTTTCAAAATCCTCATGGAGCTGGAGTGCTGCAAGGTCAGAATCATGAAGGAGCAAGAACGGTGAATCCTCAAGCTCCGGCATGTGACTCAGCCGGCGGTGCACCTTCACAGCCCAAACAGAGGGTCAGGGCCAGGAGAGGTCAAGCCACTGACCCACACAGTATTGCTGAGAGATTGCGAAGAGAGAGAATCGCAGAAAGAATGAAAGGTCTGCAGGAACTCGTTCCCAATGCGATAAAGACAGACAAGGCATCCATGCTGGATGAGATCATCGACTACGTCAAATTCTTACAGCTGCAAGTGAAGGTTCTTAGCATGAGCAGATTGGGAGGGGGTGCTGCTGCTGTTGCACCCTTGGTTGCTGACATGTCTTCTGAGGGAGGCGGTGACTGTATTCAGGCGAGTGCAGAAGGTGGGAACCTACGGCGGAAATCTAGCGGAAACCACCCAACGGTTACTTCCTCTTCCAACAACGATAACATTACAATGACAGAGCACCAGGTTACCAAGCTCATGGAGGAAGACATGGGCTCCGCAATGCAATACCTTCAAGGTAAAGGCCTTTGCCTCATGCCCATCTCGCTGGCCACTGCCATTTCAGCAGCCTCGTGTCATCCGAAGAATCCTGTGACCAACAAGTGTCAGAACAACAACCATGCACTAGCATCGAAAGGCGCCGATGGACCACCGTCACCCAGCATGTCCGTGCTGACCGTTCAATCAGCTAACGTGGGTAACGGTGCAGGGGACAGTTCGATTAGGGATGCAACGTCCGTTTCAAAACCGTGA 1485 0.5125 MEPCSREMQGMNSLLSSSQISIQDLCDNQLQQMQNPQIHDPLQSAHLDTTSHDDFLEQVLSTLPSSSWPDLAASNPKPLWDLNPVHFNGTGSVKLSDETTALSRENVAFQFDEQENLASKFRNHPITVGSPTRKPSVEAAVMLHQQLLMSRGMAAAATGSSGSARHGDDSGILHVPLSLGNGGQFDHPQNDVVDGSAFVSPNPDSDNPVRTLYNGHSGYPHGNPQASNQSRPFQNPHGAGVLQGQNHEGARTVNPQAPACDSAGGAPSQPKQRVRARRGQATDPHSIAERLRRERIAERMKGLQELVPNAIKTDKASMLDEIIDYVKFLQLQVKVLSMSRLGGGAAAVAPLVADMSSEGGGDCIQASAEGGNLRRKSSGNHPTVTSSSNNDNITMTEHQVTKLMEEDMGSAMQYLQGKGLCLMPISLATAISAASCHPKNPVTNKCQNNNHALASKGADGPPSPSMSVLTVQSANVGNGAGDSSIRDATSVSKP* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00534 494 MobiDBLite consensus disorder prediction 371 391 - -
Pte3g00534 494 MobiDBLite consensus disorder prediction 200 252 - -
Pte3g00534 494 MobiDBLite consensus disorder prediction 447 494 - -
Pte3g00534 494 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 339 IPR036638 GO:0046983
Pte3g00534 494 Gene3D - 275 337 IPR036638 GO:0046983
Pte3g00534 494 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Pte3g00534 494 SMART finulus 286 335 IPR011598 GO:0046983
Pte3g00534 494 MobiDBLite consensus disorder prediction 465 494 - -
Pte3g00534 494 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 82 431 - -
Pte3g00534 494 MobiDBLite consensus disorder prediction 183 284 - -
Pte3g00534 494 Pfam Helix-loop-helix DNA-binding domain 285 330 IPR011598 GO:0046983
Pte3g00534 494 FunFam Transcription factor bHLH66 277 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00534 Pte-Chr3 4156566 4159862 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00534 257 495 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G24260 57.364 6.35e-82 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte3g00534 HLH 2.5e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00534 - - zju:107426758 532.332