Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00526 ATGGAGAAGTTAGTGGATGAGCGTAGAGGCTATGAGAAGTTTCCAATTGGCATGCGTGTACTAGCCATAGACGATGACCCCATCTGTCTCAAAGTATTAGAACAGATGCTACGTAAATGCGAGTATGAAGTTAGAACAACTGACCGTGCAACCAAGGCGCTAACAATCTTGAGGGAGAACCGAAGCACGTTTGACCTCATCATAACTGATGTCAATATGCCAGACATGGATGGCTTTGAGTTTGTTGAACATGTCGGATTAGAGTTGGACCTACCTGTCGTTATTTTGTCAGCACACAGTGATAAGGAACTAGTAATGAAGGGTGTGATACATGGGGCATTCGAATATTTACTGAAACCTGTTAGGATGGAAGAGCTCAGGAATATTTGGCAACATGTATTTCGAAAGAAGGTTTGTCTTATGGATCGGCGAAAGGCTCTCCTTCAAGATAAGGCTCAAGGCACACTTGATGACATTGTTCGGGCCACGATATCAAACTCTGCTGATGACCAGAGTGCCAATGGAACTATGACATCGACAGAGCCGGGTGAGGATGATGATCAAGTAGAGAATGCTCCAGAAAATAATGATCCTTCAACCCAAAAGAAACCTCGAGTAGTCTGGTGCATTGATCTCCATCGAAAGTTTGTTGCTGCTGTGAAACAGTTGGGAATTGAGAAGGCTGTGCCAAAGAAAATTCTTGAGCTAATGAACGTGGAAGGACTCACGAGAGAAAATGTTGCAAGCCATCTCCAGAAATACAGGCAATACCTGAAAAGACTTCAGTCCGAGGACCAAGCACATCTGTTTGCTCCACTAGTTGCAAGAGACTCGGGCACGTACATGCGAATGGCTTCTTTGGATGTATATCATCAAGATTTCCACTTCTTTTCAGGACCAGGAAGACTTCCTATTACTTCTCCACCTGGTGGAAGTTTTGGGAGATTGAACTCTCTTTCTGCATTAATGAGCTACCATGGACTTGGGTCTTGTGGATTACTTTTCCAGGGTCAGACTCAAAGCTTGAGCAGCTCCACCAACACACTTGGAAGGATCCGGCTACCTGTGTTGTCCACAAGTCCGAGCTCCAACTTGCCTGAGAGAGTTCCCAATTCCTTGAATATTAACCACCTGCCACAGATCGTTATCTCAAGCATTGGTTCTTCTAACAATGCTTTGATGTGTCAGGGAAATACACAGAAACCACATGATCTGGGCCTGGGGACATATGGAAGTGGTTCATCTAATTGGAGTGCTGCTGCTGATCCATTGCCTCAACTTCCTTCTAATTCTTTGTCATTCACGGACCCTTTCCTCGATGAACAACCAAATCTGAGTGGTCTCCTTATCTCTTCCTCCATTCTTCCCAAAGAGAAGAGCCTCTTTGAATTTCCTCCTGCTGATACAGTTTCTGTTCTTCCAGAGGCTAGCCGCAGAGGTAGCCAATGCCGTGATGGCTTGCTCGGTGATGTGGTTCAGGCTACAACTGGTATGGCAAAGCAAAGTTGGGAGGAAAATAAACAAGATAACCAAAACTCAAGCCTTCCTTTCAAAATCACAAGCTCGATGGTCTCTTCTGCTGGTGCTGCATTGGGTTCTTTCGGGCAATATTCGCAACAACCTAATGCATTCTGCAGCAATAAGAGTGATACATCGTTGACAGGTCAACTCAATGAAGCTACTCCGTCGATGCAAAGCTCCGATGGTGGGACTTTATCCACGGATGCAGATATGAAGCAGAATGATGGCTTTGTTCCAAATGATTTGGAGCCCGTGGATGAGTTGATGATTATGGTACCGGAGCGAGCATGA 1812 0.452 MEKLVDERRGYEKFPIGMRVLAIDDDPICLKVLEQMLRKCEYEVRTTDRATKALTILRENRSTFDLIITDVNMPDMDGFEFVEHVGLELDLPVVILSAHSDKELVMKGVIHGAFEYLLKPVRMEELRNIWQHVFRKKVCLMDRRKALLQDKAQGTLDDIVRATISNSADDQSANGTMTSTEPGEDDDQVENAPENNDPSTQKKPRVVWCIDLHRKFVAAVKQLGIEKAVPKKILELMNVEGLTRENVASHLQKYRQYLKRLQSEDQAHLFAPLVARDSGTYMRMASLDVYHQDFHFFSGPGRLPITSPPGGSFGRLNSLSALMSYHGLGSCGLLFQGQTQSLSSSTNTLGRIRLPVLSTSPSSNLPERVPNSLNINHLPQIVISSIGSSNNALMCQGNTQKPHDLGLGTYGSGSSNWSAAADPLPQLPSNSLSFTDPFLDEQPNLSGLLISSSILPKEKSLFEFPPADTVSVLPEASRRGSQCRDGLLGDVVQATTGMAKQSWEENKQDNQNSSLPFKITSSMVSSAGAALGSFGQYSQQPNAFCSNKSDTSLTGQLNEATPSMQSSDGGTLSTDADMKQNDGFVPNDLEPVDELMIMVPERA* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00526 603 PANTHER TWO-COMPONENT RESPONSE REGULATOR 18 373 IPR045279 GO:0009736
Pte3g00526 603 CDD REC_typeB_ARR-like 20 134 - -
Pte3g00526 603 PIRSF RR_ARR_type-B 2 409 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pte3g00526 603 PIRSF RR_ARR_type-B 474 584 IPR017053 GO:0003677|GO:0003700|GO:0009736
Pte3g00526 603 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 259 IPR017930 -
Pte3g00526 603 MobiDBLite consensus disorder prediction 167 201 - -
Pte3g00526 603 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Pte3g00526 603 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Pte3g00526 603 MobiDBLite consensus disorder prediction 167 182 - -
Pte3g00526 603 FunFam Two-component response regulator 199 262 - -
Pte3g00526 603 SMART REC_2 18 130 IPR001789 GO:0000160
Pte3g00526 603 Gene3D - 199 262 - -
Pte3g00526 603 MobiDBLite consensus disorder prediction 548 580 - -
Pte3g00526 603 SUPERFAMILY CheY-like 17 143 IPR011006 -
Pte3g00526 603 Pfam Response regulator receiver domain 20 129 IPR001789 GO:0000160
Pte3g00526 603 Gene3D - 17 152 - -
Pte3g00526 603 MobiDBLite consensus disorder prediction 548 588 - -
Pte3g00526 603 SUPERFAMILY Homeodomain-like 200 260 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00526 Pte-Chr3 4125359 4129681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00526 12 339 Response Regulator Gene Family AT2G25180 48.235 6.83e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Pte3g00526 Response_reg 2.9e-25 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00526 K14491 - qsu:112019876 456.832
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00526 3 4125359 4129681 Pte3g00526 3 4125359 4129681 RCT