Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00524 ATGGCTTCCCTTCGCCGCTGGTGCTATGAAATTCGTTCACCCTACTTACTACTTGATTCCGAAGCTTGCGGTGCAAATAAGACACCATCTGATGATCGATCTCCACTTGAAGTTTTTGTCATGTTCTTACACTATATAAGTGTAGATGACGAGGGAAGAACTATGGTCTTTCTTGATTATTCAAGTCATAAACAAGAGTCAACCCGCTTCGAACATTCCACACTCCACTGCTATGACTCTGCATTCTCCAAGCTTTCTGAAATTTTATCATCCATGGGAATCAATTCTATACATCATGACAATATTCTAAGCGATGGTCTATCTGTTTGGGGTCTGATTTCTAAAATAGAAATCCCATCACACATGCGAGATAAAGAGATACGCATCTCTGTTCGGCTTCAGTGTTTGGTTCGGCGTCTCAGCCACAAGCAGTGTCTGGAGGCACGGGCTGCTTCAAATATTGCCATCGTTCCAGCATATAGGAAAGAGGTGGAAAAGGAAGTGAAGGTATTTGTTGACACAACATGCTGCGTCTGTTTGGAGAAGTTTAATATGGAGGGAAGTGATGAATTTATGGCAACCATGCCTTGCTCTCATGTGTTTCATGAGAGATGCATATTCCAGTGCATCTACAGGAGTCCCTACTGTCCTCTCTGTCGCTCCAATGTTCACTTTCTGCTTCCGCTCCGATGTTCACTTTCTGCTTCCACTTCCACCACATAA 723 0.4343 MASLRRWCYEIRSPYLLLDSEACGANKTPSDDRSPLEVFVMFLHYISVDDEGRTMVFLDYSSHKQESTRFEHSTLHCYDSAFSKLSEILSSMGINSIHHDNILSDGLSVWGLISKIEIPSHMRDKEIRISVRLQCLVRRLSHKQCLEARAASNIAIVPAYRKEVEKEVKVFVDTTCCVCLEKFNMEGSDEFMATMPCSHVFHERCIFQCIYRSPYCPLCRSNVHFLLPLRCSLSASTSTT* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00524 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 225 IPR013083 -
Pte3g00524 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 221 - -
Pte3g00524 240 SMART ring_2 176 219 IPR001841 -
Pte3g00524 240 SUPERFAMILY RING/U-box 165 227 - -
Pte3g00524 240 ProSiteProfiles Zinc finger RING-type profile. 176 220 IPR001841 -
Pte3g00524 240 Pfam Ring finger domain 175 220 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00524 Pte-Chr3 4108257 4109077 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00524 128 221 C3H Transcription Factor Family AT3G15740 29.897 1.57e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00524 - K15699 qsa:O6P43_033048 74.3294