Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00517 ATGGCTTTTCATCAAGAACATTTGCTCAATCAAATGGCTTTTCAAACTTTTATCGACAACCCACATACACACTCTCACCAGTCAAGTGAAAACAGAGACATGCAGATGCAGAGGTCGTTGACTGTTAACGTTAACAACTCAATTGATCTTAGGCAGCAGGATTTCTTTCACTTGCAGAACGACCATCATGTTCAGGAGATGAGTAGAGGCACCAACCGGAGTAACAGTAGCACTGAGTCTGAGGATTTGCTAAGTGCACATAAGGCTGACATCTTAGCTCATCCGTTGTACGAACAGCTTCTATCGGCTCATGTTTCCTGTTTAAGAATTGCCACACCGGTTGACCAGTTGCCCAAGATTGACGGACAGCTCGCACAGTCTCAGCGCGTGGCGGACAAGTACTCTACTGTTGTTGGCAGTGGTGTGGTAGACGACAAGGAGCTTGATCAGTTTATGACAAATTATGTTTTGATTCTGTCTTCCTTTAAAGAGCAATTGCAACAACACGTCCGTGTTCATGCTATGGAAGCTGTAATGGCCTGCTGGGAGCTCGAGCAATCGCTGCAGAACTTAACAGGTGTATCTCCAGCAGAGGGGACAGGTGCAACCATGTCTGATGATGAAGATGACCAGACAAATAGCAATCCCAATCTATACGAAGGAAATCCAGAAGGTCCCGATTGCCTTGGCTTTGGTCCTCTGGTTCCCACTGAATCTGAAAGATCCTTGATGGAGCGTGTGCGGCAAGAACTGAAGCATGAACTAAGACAGGGTTACAAGGAAAAGATCGTGGACATCAGAGAAGAGATTCTACGGAAGAGAAGAGCAGGGAAGCTTCCTGGGGATACCACGTCTCTCTTAAAGTCGTGGTGGAAAGCACATTCTAAGTGGCCATATCCAACTGAGGAAGACAAGGCAAGGTTGGTGAAGGAAACTGGTTTGCAATTAAAGCAAATAAACAACTGGTTCATTAATCAAAGGAAAAGAAATTGGCATACCAATCCTTCATCTTCTGTTTCTTCAAAGAGCAAACGCAAAAATAACACAGGTGAAGCTAGCAGCCAAAGCTTTATGTGA 1077 0.4494 MAFHQEHLLNQMAFQTFIDNPHTHSHQSSENRDMQMQRSLTVNVNNSIDLRQQDFFHLQNDHHVQEMSRGTNRSNSSTESEDLLSAHKADILAHPLYEQLLSAHVSCLRIATPVDQLPKIDGQLAQSQRVADKYSTVVGSGVVDDKELDQFMTNYVLILSSFKEQLQQHVRVHAMEAVMACWELEQSLQNLTGVSPAEGTGATMSDDEDDQTNSNPNLYEGNPEGPDCLGFGPLVPTESERSLMERVRQELKHELRQGYKEKIVDIREEILRKRRAGKLPGDTTSLLKSWWKAHSKWPYPTEEDKARLVKETGLQLKQINNWFINQRKRNWHTNPSSSVSSKSKRKNNTGEASSQSFM* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00517 358 Gene3D - 271 332 - -
Pte3g00517 358 SMART HOX_1 272 337 IPR001356 GO:0003677
Pte3g00517 358 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 338 - -
Pte3g00517 358 MobiDBLite consensus disorder prediction 330 358 - -
Pte3g00517 358 ProSiteProfiles ELK domain profile. 250 270 IPR005539 GO:0003677
Pte3g00517 358 MobiDBLite consensus disorder prediction 206 220 - -
Pte3g00517 358 SMART KNOX1_2 85 129 IPR005540 GO:0003677|GO:0005634
Pte3g00517 358 FunFam homeobox protein knotted-1-like 3 isoform X1 271 332 - -
Pte3g00517 358 SMART ELK_2 250 271 IPR005539 GO:0003677
Pte3g00517 358 ProSiteProfiles 'Homeobox' domain profile. 270 333 IPR001356 GO:0003677
Pte3g00517 358 Pfam KNOX1 domain 88 128 IPR005540 GO:0003677|GO:0005634
Pte3g00517 358 MobiDBLite consensus disorder prediction 63 82 - -
Pte3g00517 358 Pfam ELK domain 250 271 IPR005539 GO:0003677
Pte3g00517 358 SMART KNOX2_2 138 193 IPR005541 GO:0003677|GO:0005634
Pte3g00517 358 Pfam KNOX2 domain 142 192 IPR005541 GO:0003677|GO:0005634
Pte3g00517 358 Pfam Homeobox KN domain 290 329 IPR008422 GO:0003677|GO:0006355
Pte3g00517 358 CDD homeodomain 273 334 IPR001356 GO:0003677
Pte3g00517 358 MobiDBLite consensus disorder prediction 193 225 - -
Pte3g00517 358 SUPERFAMILY Homeodomain-like 272 337 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00517 Pte-Chr3 4067108 4070137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00517 87 355 Homeobox Transcription Factor Family AT5G11060 79.779 8.51e-161 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pte3g00517 KNOX2 1.5e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00517 - - pcin:129320455 505.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00517 3 4067108 4070137 Pte3g00517 3 4067108 4070137 RCT