Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00515 ATGGCAGGAATGCTTCCAGGAGTTGAAGCTGCTAGAAGGAGAAGGATCCATTTGAGTGGAGGATGCAACGATCTACCAAATATGGCTGCTCATAAATTGACACGGCGGGCTTCTTTCTGTTTATATTCTAGCAACCATGACGTTCACCATTCATCTTGCTCCATGTTACAGACCAGAAGCATAGTGAAACAGGCACACATGGATGACAATCTAGAAGGTGTCGCCAGAAAAGCTAAACAAAGGTTGGATGAAAAGTTGAGAACTTTACACGAGAAAACTCAGACTGCTAGAAGTCGGGAAAGTGGCAAAGGAAAATGGAGCTGTGTAGAAGGCCATTCAGCTATAACAAGAGAGTTGCACTTCGAGGTATATGGATCACAGAAAGGTGGGTGGAGGAGGTTCAGTTGGGGCAAAGTAAGCAAAAAGGGTTCAGACCAAGATGAGTGTGCTGTGTGTTTGGAGTCATTCAAGTTTGGTGAGATACTGATGCACCTGCCCTGCTCCCATAGTTTCCACTCGAGGTGCTTGGAGCCATGGCTAGAAAATAAAGCTCACTGCCCTTGTTGCAGAACAAAGATATCATCTTCCACATAG 594 0.4529 MAGMLPGVEAARRRRIHLSGGCNDLPNMAAHKLTRRASFCLYSSNHDVHHSSCSMLQTRSIVKQAHMDDNLEGVARKAKQRLDEKLRTLHEKTQTARSRESGKGKWSCVEGHSAITRELHFEVYGSQKGGWRRFSWGKVSKKGSDQDECAVCLESFKFGEILMHLPCSHSFHSRCLEPWLENKAHCPCCRTKISSST* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00515 197 Coils Coil 75 95 - -
Pte3g00515 197 SUPERFAMILY RING/U-box 144 195 - -
Pte3g00515 197 FunFam Zinc finger family protein 123 195 - -
Pte3g00515 197 CDD RING-H2_PA-TM-RING 148 190 - -
Pte3g00515 197 Pfam Ring finger domain 147 190 IPR001841 -
Pte3g00515 197 ProSiteProfiles Zinc finger RING-type profile. 149 190 IPR001841 -
Pte3g00515 197 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 124 196 IPR013083 -
Pte3g00515 197 SMART ring_2 149 189 IPR001841 -
Pte3g00515 197 PANTHER SI:CH211-59O9.10 142 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00515 Pte-Chr3 4060543 4062470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00515 1 87 C3H Transcription Factor Family AT2G15580 44.898 4.17e-18 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00515 - - cave:132184843 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00515 3 4060543 4062470 Pte3g00515 3 4060543 4062470 RCT