Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00511 ATGGAAAGTAGTGCCACGAACAAACTCCTTTATGGAAATGGTGCTGAAGAAGCTGAAGCAACTATTGAGATAAAAATAAAAACACTGGATTCACAAACGCATACTCTTAGAGTGGACAAGCAGGTGTCAGTACCTGCTTTGAAAGATCAAATTGCTTCCGTAACTGGCGTGTTATCAGAACAACAGCGACTAATTTGCCGTGGAAAAGTTTTAAAGGATGATCAGCTTCTGTCTGCCTATCACGTGGAAGATGGTCACACCTTGCATTTGGTTGCCCGACAACCTGACCTAGCATCATCTGGTTTACCCCATCATCAAGCAAATGACCCAAACTCAAGTGGAAGTCATGGACACCATAGTCAATCAGCTCCTGGTGTTGTAATTGAAACATTCAATATGCCTGTTCGTGGGGACAGAGTTACTCCTGATATCAGTAGGATTTTCTCTGCAGTTATTGGATCTATTGGAATTTCAAACATAATTGGCGGAACTGAGGGGATTGGTGTCAGGGAAAACGACCTACATACACTTGACAGAACAACAGGTTTGAGTGGCACGTCGGAGGCATCTCATCCTCACCCTGATCAAGTGGGTGTGCAGGGTCTAACTGAAAGTTTACGTGGTATTTTTGAATTTCCAACTGCAGTTTCTTTGGGTTCCCATCCTCAGGTTATTCCTGATTCTTTGACTACTATGTCACTGTTCTTGAGTCATATGAGGAGCCAATTTGATGCTATACTCAGAGATCCAGCGAGCAATGTCCAATCAGCTGAGATTCATCAGGCAGAAGAAAGAAGTGCTAATACATCTTCTCCAAGCACTAGGAACCAAGAGTTCTTATCACCTGCATCATTGGCAGAAGTCTTGCTTTCAACTAGAAATATGTTCATTGGACAAGCTGGGGAGTGTGTAATTCAACTTGCTAGACAGTTGGAGAGTCAAGCAAATATAGATGATCCCTTGATGCGCTCAACCATCCAGGCTAATGCATTAAGAACTGGAGGTCAATTATATAATCTAGGTGCTTTCCTCCTTGAACTTGGCCGCACTACCATGGCATTGCGTCTGGGTCAGACACCGTCTGAAGCAGTAGTCAATAGTGGTCCTGCTGTTTTTATATCCTCATCAAGTCCTAATCCTATCATGGTTCAGCCTCTTCCTTTCCAATCGACTTCAAGCTTGGGTTCTGTTCCCATGGGAGCTGCGCCATCTGTCTCTGGGTTTCTACCTAGGCGCATTGATTTACAAATAAGGCGAGGCTCATCAACATCCCCTGACAATGTGAATCGTGAGGACCATGGTGACCGACAACATTCAACAGCACAAAGAAATCTAGGTGAAAATTCTGTTAATCAAGCAGCTTCAAGAGATGCCGAAGCTACATCTCTTCCTGGGGAGTCAGGAGTAAGGGTAGTGCCCATAAGAACTGTGGTTGCAAGCGTACCTGGTTCCTTTGGTTTCCCTTCAGAATCATTAGGACCATTACCAACTCCGAATATAAGACAAGAGATGCCTAATGCTCGCACTGCAAGTATTAATGTTTTGACTTCTGGTGGGGCTCAAAGGAACCAAACTGAGCAGCAAATGCCCAGCCATGTTCTTCAGTTTTTAAGGAGTGCCTTCCCTGGCGATGAAATCCACACGGAAGGCTCTAGTTTACAAGGAACAAATGCAAATTCTGAGGAAGCTGGTATAGGTAGAGGTTCAGCCCAAGTGCCAGCAGCAGAAGCTAATGTTAGTGATGAAGGAGTATTCTTGTCTAATTTACTGCGTGAAATCATGCCTGTCATCTCTCAACATACTGGTGCAGAGGCAAATGCTTCTTCACAAGGGCCAAATGCTGCTTCGAGTGAGCATCTGACCAGAGAATCTGCTAACCATGCTGGGACTAATGCTGGTACAGCAAGGAGGCATGATGATAATGAATCAAGCTCACCAAGTTCAAAACGTCAAAAGACGGAGTAA 1965 0.4443 MESSATNKLLYGNGAEEAEATIEIKIKTLDSQTHTLRVDKQVSVPALKDQIASVTGVLSEQQRLICRGKVLKDDQLLSAYHVEDGHTLHLVARQPDLASSGLPHHQANDPNSSGSHGHHSQSAPGVVIETFNMPVRGDRVTPDISRIFSAVIGSIGISNIIGGTEGIGVRENDLHTLDRTTGLSGTSEASHPHPDQVGVQGLTESLRGIFEFPTAVSLGSHPQVIPDSLTTMSLFLSHMRSQFDAILRDPASNVQSAEIHQAEERSANTSSPSTRNQEFLSPASLAEVLLSTRNMFIGQAGECVIQLARQLESQANIDDPLMRSTIQANALRTGGQLYNLGAFLLELGRTTMALRLGQTPSEAVVNSGPAVFISSSSPNPIMVQPLPFQSTSSLGSVPMGAAPSVSGFLPRRIDLQIRRGSSTSPDNVNREDHGDRQHSTAQRNLGENSVNQAASRDAEATSLPGESGVRVVPIRTVVASVPGSFGFPSESLGPLPTPNIRQEMPNARTASINVLTSGGAQRNQTEQQMPSHVLQFLRSAFPGDEIHTEGSSLQGTNANSEEAGIGRGSAQVPAAEANVSDEGVFLSNLLREIMPVISQHTGAEANASSQGPNAASSEHLTRESANHAGTNAGTARRHDDNESSSPSSKRQKTE* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00511 654 MobiDBLite consensus disorder prediction 98 122 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 425 440 - -
Pte3g00511 654 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 15 491 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 178 199 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 545 569 - -
Pte3g00511 654 PRINTS Ubiquitin signature 74 95 IPR019956 -
Pte3g00511 654 PRINTS Ubiquitin signature 32 52 IPR019956 -
Pte3g00511 654 PRINTS Ubiquitin signature 53 73 IPR019956 -
Pte3g00511 654 SMART ubq_7 22 93 IPR000626 GO:0005515
Pte3g00511 654 MobiDBLite consensus disorder prediction 602 654 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 483 502 - -
Pte3g00511 654 SUPERFAMILY Ubiquitin-like 19 102 IPR029071 -
Pte3g00511 654 Gene3D - 15 115 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 441 458 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 549 564 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 417 465 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 258 278 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 178 193 - -
Pte3g00511 654 Pfam Ubiquitin family 24 94 IPR000626 GO:0005515
Pte3g00511 654 MobiDBLite consensus disorder prediction 104 120 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 633 654 - -
Pte3g00511 654 MobiDBLite consensus disorder prediction 602 631 - -
Pte3g00511 654 FunFam Large proline-rich protein BAG6 14 106 - -
Pte3g00511 654 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00511 Pte-Chr3 4035386 4040960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00511 22 93 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 38.889 4.10e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00511 K23390 - gmx:100783070 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00511 3 4035386 4040960 Pte3g00511 3 4035386 4040960 RCT