Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00487 ATGGCCATCCACAACTTCAATGGTGACGCTGAGTCAATCACTCAGCCCTTAGTCTCTCGTCCAAGATCTTTTGTGAATTCGACCTCTCAGGTTGCTCTTGTAGGTGCCAATGTCTGCCCAATCGAGAGCCTTGACTACGAGATTATTGAGAATGAGTTATTTAAGCAGGACTGGAGGAGTAGAGAGAAAATTCAGATTTTTCAGTACATATGCATGAAATGGATTTTGTGCTTCCTCGTTGGCTTGATCGTCAGTCTGATTGGGTTTTTCAACAACCTCGCGGTTGAGAATATCGCTGGCTTCAAGTTCGTCATCACTTCTAATATGATGTTGAAGAACAGGTATCTGATGGCTTTTCTTGTATTTTCTATCTCAAATTTGGTCCTCACTCTCTTTGCATCTCTGACTACTGCATTCGTAGCACCAGCAGCTGCTGGTTCAGGTATACCAGAAGTGAAAGCTTATCTGAATGGTGTAGACGCACCTGGAATATTCAACTTTAGAACATTGTTCGTGAAGATTGTAGGAAGCATCTCAGCTGTGTCTTCATCTCTTCTTGTCGGGAAAGCCGGTCCCATGGTGCATACAGGTGCATGTGTTGCATCATTGCTCGGTCAGGGTGGATCAAAACGGTTCGGTTTAACATGGAGATGGTTACGTTATTTTAAGAATGACCTAGACCGGAGGGATCTTGTTACATGTGGATCAGCTGCCGGAATAGCTGCTTCCTTCCGTGCTCCTGTTGGTGGTGTGTTGTTTGCTCTTGAAGAGATGGCATCTTGGTGGAGGAGCGCCCTGCTATGGAGAGCTTTCTTCACAACAGCTGTAGTTGCAATTGTGCTGCGGGTTCTAATTGATGTTTGTCTAAGTGGAAAATGTGGTCTGTTTGGCAAAGGTGGGCTTATAATGTTTGATGTCTATTCAGCAAGCATCTCATATCACCTTGTGGATGTGCCTCCTGTAATTATTCTTGGAGTCATTGGAGGCATATTGGGAAGCTTATATAATTTTCTTTTAGAGAGAGTTCTCCTTATTTATAATCTCATTAACGAGAAAGGACTTGCTTACAGAATTTTTCTTGCTTGCTTCATCTCCATCTGCACATCCTGTCTTCTATTTGGCTTGCCATGGGCTGCATCTTGCCGACCATGTCCACCAGATGCAATGGAGGCTTGTCCTACAATTGGTCGCTCCGGCAACTACAAGAAGTTCCAGTGTCCTCCTGGTTACTACAATGATCTTGCCAGTCTTATTTTCAACACAAATGATGATGCTATCAGAAATCTGTTTAGCAAGAACACAGACAATGAGTTTGAACACTTATGTATGCTCATATTTTTTGTCACATGCTTCTGTTTAAGTATCTTCAGTTATGGAATTGTAGCTCCAGCTGGTCTTTTTGTGCCAGTCATTGTAACTGGTGCATCTTATGGACGTTTTGTTGGGATGCTAGTGGGCAAGAGGTCAAATCTGAACCATGGCCTTTATGCAGTGCTCGGTGCTGCTTCTTTTCTTGGTGGCTCTATGAGGATGACAGTTTCCCTCTGCGTAATTATACTAGAATTGACCAACAATTTGTTATTACTACCCCTAATAATGTTGGTACTTCTCATTTCGAAGACAGTGGCCGATGCTTTTAGCGGAAACATTTATGATCTTATAATGAAAGCAAAAGGATTCCCTTATTTAGAATCTCATGGTGAGCCTTACATGAGGCAGTTGACTGTAGGTGATGTGGTAACAGGTCCTCTCCAACTGTTTCATGGCATTGAGAAGGTTGGTTATATAGAGTATGTCCTCAGACATACACGACATAATGGATTCCCTGTGATTGATGAACCTCCACATTCAGAAAGTCCGATTTTGTTTGGTATAATCCTTCGAGCTTATCTTCTCACATTATTGAAGAACAAAGCTTTCTCAGCTACAGCAGTTCTGGCCGGTAGTGATGCCTTTAGGCAATTTACAGCCAATGATTTTGCAAAGAAGAGTTCAGGCAATGTTGGCACAATAGAAGATATCCAGTTGACGGAGGATGAGAGAGAAATGTTCATCGATCTCCATCCTTTTACTAATGCTTCACCTTATACTGTTGTTGAAACAATGTCACTAGGAAAGGCCCTCACACTGTTTCGAGAAGTTGGTTTGAGACACCTGCTGGTAATACCCAAGATATCTGGTAGATCACCTGTAGTTGGTATATTGACAAGGCACGATTTTATGCCAGAACATATATTGAGTTTGCATCCTTCACTGGAGAGGAGAAGATGGAGAAAATTAAGGTTTCAGTTGCCTTTGCTTCGTAAACTTTTTTAA 2316 0.4223 MAIHNFNGDAESITQPLVSRPRSFVNSTSQVALVGANVCPIESLDYEIIENELFKQDWRSREKIQIFQYICMKWILCFLVGLIVSLIGFFNNLAVENIAGFKFVITSNMMLKNRYLMAFLVFSISNLVLTLFASLTTAFVAPAAAGSGIPEVKAYLNGVDAPGIFNFRTLFVKIVGSISAVSSSLLVGKAGPMVHTGACVASLLGQGGSKRFGLTWRWLRYFKNDLDRRDLVTCGSAAGIAASFRAPVGGVLFALEEMASWWRSALLWRAFFTTAVVAIVLRVLIDVCLSGKCGLFGKGGLIMFDVYSASISYHLVDVPPVIILGVIGGILGSLYNFLLERVLLIYNLINEKGLAYRIFLACFISICTSCLLFGLPWAASCRPCPPDAMEACPTIGRSGNYKKFQCPPGYYNDLASLIFNTNDDAIRNLFSKNTDNEFEHLCMLIFFVTCFCLSIFSYGIVAPAGLFVPVIVTGASYGRFVGMLVGKRSNLNHGLYAVLGAASFLGGSMRMTVSLCVIILELTNNLLLLPLIMLVLLISKTVADAFSGNIYDLIMKAKGFPYLESHGEPYMRQLTVGDVVTGPLQLFHGIEKVGYIEYVLRHTRHNGFPVIDEPPHSESPILFGIILRAYLLTLLKNKAFSATAVLAGSDAFRQFTANDFAKKSSGNVGTIEDIQLTEDEREMFIDLHPFTNASPYTVVETMSLGKALTLFREVGLRHLLVIPKISGRSPVVGILTRHDFMPEHILSLHPSLERRRWRKLRFQLPLLRKLF* 772
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00487 771 CDD CBS_pair_voltage-gated_CLC_euk_bac 575 743 - -
Pte3g00487 771 SUPERFAMILY Clc chloride channel 51 566 IPR014743 -
Pte3g00487 771 Gene3D Clc chloride channel 65 564 - -
Pte3g00487 771 PRINTS Chloride channel signature 173 192 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00487 771 PRINTS Chloride channel signature 494 510 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00487 771 PRINTS Chloride channel signature 237 256 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00487 771 PRINTS Chloride channel signature 462 482 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00487 771 PRINTS Chloride channel signature 512 531 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00487 771 PRINTS Chloride channel signature 142 159 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00487 771 PRINTS Chloride channel signature 550 564 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Pte3g00487 771 SUPERFAMILY CBS-domain pair 566 741 IPR046342 -
Pte3g00487 771 ProSiteProfiles CBS domain profile. 690 751 IPR000644 -
Pte3g00487 771 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 22 747 - -
Pte3g00487 771 Gene3D - 565 741 IPR046342 -
Pte3g00487 771 CDD ClC_6_like 42 563 - -
Pte3g00487 771 FunFam Chloride channel ClC3 65 380 - -
Pte3g00487 771 Pfam CBS domain 694 740 IPR000644 -
Pte3g00487 771 PRINTS Plant CLC chloride channel signature 414 430 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00487 771 PRINTS Plant CLC chloride channel signature 272 282 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00487 771 PRINTS Plant CLC chloride channel signature 290 297 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00487 771 PRINTS Plant CLC chloride channel signature 258 266 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00487 771 PRINTS Plant CLC chloride channel signature 47 55 IPR002251 GO:0005247|GO:0006821|GO:0016020
Pte3g00487 771 Pfam Voltage gated chloride channel 130 544 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00487 Pte-Chr3 3898516 3902517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00487 11 765 Ion Channels AT5G33280 75.762 0.0 1148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00487 K05016 - qsa:O6P43_002449 1254.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00487 3 3898516 3902517 Pte3g00487 3 3898516 3902517 RCT