LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte3g00482	ATGGGTTGCGTGAGTTCGAAGAACATTGTGTCGGTGACACCTGCTATAGACTACTCGGGTGCGTTTAGGAGTAATGTGGGATCAGTGAACTCAGGTCGGAGTCATGTTGGATTGGGTGACATGGAGAAGAAGAGCAAGAACAAGAAGAATGATTCGGTGGGGTTGAGGGGAGGAAGAGGGAGCGAATTGGGCGACTCAGGGAGTGTGATTTCTTGCAATTCGGAATCTTTGAGCTTCAGGTTGGGTACTCTGAAGAAGTACGCGGAAGGGGAACAGGAGGATGCCGGCTGGCCGGCTTGGCTTAGTTCTGTCGCCGGTGAAGCAATTCAAGGCTGGGTACCTCTCCGAGCCGATGCTTTTGAGAAATTGGAGAAGATTGGACAGGGTACATATAGCAGTGTCTTTCGAGCACGTGAACTTGAAACAGGAAAGACAGTTGCTCTGAAGAAAGTGCGGTTTGATAATTTTGAGCCAGAAAGTGTTAGGTTTATGGCACGAGAAATTATGATCCTTCGCAAGTTTGACCATCCAAACGTTATAAAATTGGAAGGCATAATCACTTCAAGATTATCTTCTAGCATATACCTTGTGTTTGAATACATGGAACATGACATTGCAGGACTCTTGTCTTGCTGCCCTGATATCAAGTTCAGTGAGTCACAGATTAAATGCTACATGAAGCAATTGTTGTCTGGACTAGAGCATTGTCACTCCCGGGGAATAATGCATCGGGACATTAAAGGATCAAATCTTTTGGTTAGCAATGAAGGAATACTAAAGGTGGCTGATTTTGGATTGGCAAACTTCTCTAATCCTGGACGCAGACAGCCTTTAACGAGTCGCGTTGTCACTTTATGGTACCGTCCTCCCGAACTGTTACTAGGATCAACAGACTATGGGGTGGCTGTTGATCTCTGGAGTGTAGGCTGCGTGTTTGCAGAACTATTGATCGGAAAACCCATATTTCAAGGGAGGACTGAGGTTGAACAGTTGCACAAAATCTTCAAGCTTTGTGGGACCCCGCCAGATGAATACTGGAAAAAGTCCAGACTTCCTCATTCTACCCTCTTCAAACCGCAGCAACAGTACCATAGTTGTCTGCGGGAAACTTTTAAGGATTTGCCTGCCTCTGCTGTGAATCTGCTTGAAACTCTTCTTTCTGTAGAACCTGGCAAGCGTGGGACTGCCTACTCGGCTCTTTCATCTGAGTACTTTAAAGCTAAGCCATACGCTTGTGATCCATCAAGCTTGCCATCTTACCCACCAAGCAAGGAAATCGATGCAAAATATCGGGAAGAGGCAAGGAGGAAAAGAAACAATGGAAGAGTTCGTGGACCAGAAAGAAGAAAGCCTACAAGAAAACCACTCAGTATCTCTAAATTAGCACCTGATGAGGAGCTAGTTACCAAGTGCCAGAATTTGCAAAAATCGAACAGTTATTCTGTTCCTAGTATCGAAGCGAACAAGATTAGTATGCCTGAGGCTGTGCATGCTCCAAAGGCATCAATTACTAAGGAAGATGCTTTCCCTGTAAAGAATACATCTCAAGGAGACATTCCATATTCTGGTCCTTTACAAGTCTCGACCTCAAGTGGCTTTGCGTGGGCCAAAAGACGAAATGATGATACATATAAACGATCCCACAGTCGAACTTTATCTAGAGGGCATATATTTGGACCCTTAGAAATATCCACATTGAGTTCAAGGAACAATTCTGAGGAAAATAAGGATTTTAATGAAGACTGCGCTGAATCTAGAAGGCACGGTACATACGAAAGATCCAAACTTTCAGTACACAACCAATGGGGTAAATTTGATAGGCCAGACTCATTTGATGCTTCTGAAGGCTACCATTCACAAGAATTGTCGATGGCACTTTATAACAAGGAGGAAATGGGTACGAGAAAAAGTTACCTGAGCTACCAAGATCAAGGAGAAAAGGTTGAATTCTCAGGGCCATTGCTGTCTCAAATGAGTAAAATTGATGAATTATTAGAAAGGCATGAGCGTCACATTCGTATGACAGCTCGAAAATCCTGGTTTCAGATAGGTAAGAAACATCATGTGTATTGA	2073	0.439	MGCVSSKNIVSVTPAIDYSGAFRSNVGSVNSGRSHVGLGDMEKKSKNKKNDSVGLRGGRGSELGDSGSVISCNSESLSFRLGTLKKYAEGEQEDAGWPAWLSSVAGEAIQGWVPLRADAFEKLEKIGQGTYSSVFRARELETGKTVALKKVRFDNFEPESVRFMAREIMILRKFDHPNVIKLEGIITSRLSSSIYLVFEYMEHDIAGLLSCCPDIKFSESQIKCYMKQLLSGLEHCHSRGIMHRDIKGSNLLVSNEGILKVADFGLANFSNPGRRQPLTSRVVTLWYRPPELLLGSTDYGVAVDLWSVGCVFAELLIGKPIFQGRTEVEQLHKIFKLCGTPPDEYWKKSRLPHSTLFKPQQQYHSCLRETFKDLPASAVNLLETLLSVEPGKRGTAYSALSSEYFKAKPYACDPSSLPSYPPSKEIDAKYREEARRKRNNGRVRGPERRKPTRKPLSISKLAPDEELVTKCQNLQKSNSYSVPSIEANKISMPEAVHAPKASITKEDAFPVKNTSQGDIPYSGPLQVSTSSGFAWAKRRNDDTYKRSHSRTLSRGHIFGPLEISTLSSRNNSEENKDFNEDCAESRRHGTYERSKLSVHNQWGKFDRPDSFDASEGYHSQELSMALYNKEEMGTRKSYLSYQDQGEKVEFSGPLLSQMSKIDELLERHERHIRMTARKSWFQIGKKHHVY*	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte3g00482	690	FunFam	probable serine/threonine-protein kinase At1g54610	203	444	-	-
	Pte3g00482	690	Pfam	Protein kinase domain	120	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte3g00482	690	Gene3D	Transferase(Phosphotransferase) domain 1	203	444	-	-
	Pte3g00482	690	MobiDBLite	consensus disorder prediction	416	456	-	-
	Pte3g00482	690	CDD	STKc_CDK9_like	120	405	-	-
	Pte3g00482	690	ProSiteProfiles	Protein kinase domain profile.	120	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte3g00482	690	MobiDBLite	consensus disorder prediction	33	60	-	-
	Pte3g00482	690	MobiDBLite	consensus disorder prediction	568	590	-	-
	Pte3g00482	690	FunFam	probable serine/threonine-protein kinase At1g54610	107	202	-	-
	Pte3g00482	690	ProSitePatterns	Protein kinases ATP-binding region signature.	126	149	IPR017441	GO:0005524
	Pte3g00482	690	MobiDBLite	consensus disorder prediction	425	440	-	-
	Pte3g00482	690	MobiDBLite	consensus disorder prediction	573	590	-	-
	Pte3g00482	690	SMART	serkin_6	120	405	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pte3g00482	690	MobiDBLite	consensus disorder prediction	37	55	-	-
	Pte3g00482	690	PANTHER	CELL DIVISION PROTEIN KINASE	118	409	-	-
	Pte3g00482	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	241	253	IPR008271	GO:0004672\|GO:0006468
	Pte3g00482	690	SUPERFAMILY	Protein kinase-like (PK-like)	114	411	IPR011009	-
	Pte3g00482	690	Gene3D	Phosphorylase Kinase; domain 1	107	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte3g00482	Pte-Chr3	3839470	3844498	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte3g00482	112	463	Core Cell Cycle Gene Families	AT5G10270	48.098	6.73e-108	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Pte3g00482		Pkinase	4.6e-69	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte3g00482	-		-	qsa:O6P43_001986	1012.68