Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00473 ATGGAAACTCGTGATCAGATCGAAGAACATGGTCCCTTTCCGGGTATACCAAAATTAATGTTGTGCGCCATTTCTGGAGTTCTTACAGGATCCTGTGCTATTGCTGGAGCCTTCACAGGAGCTGTTGCTGGCGCTTTGGCGGGTAGGGCCTCTGACAGTGGGATTCTTCGTGGAGCTGTTCTGGGTGCAGTTGCTGGTGCTGTACTTTCAATTGAGATGTTAGAGGCTTCCCGTGCCTATTGGTGTCTGGAGCAAACTGGCTCACGGGGAACATCAGCTATGGCAGACTTCATTGAGGAACTTCATGGAAGGTTTGTAGACGAACAATTTTCACGGTCAATAATTACTGCTCATCATTGGCAGCGTGTTAGTATAGCAGCTGGAGATTTTGAGGAGATTAATAATGTCCAAGAATTAGTATCGTGTCAAGGGTTATCATACGATTTGTTGGATAAACTACCGCATCACTTGATTAAGAAGGAGATGAAGACAGAGCTTAACCTCTTCTGCACAATATGCTTGCAGGATATTGAAACGGGAGAAATTGCAAGGAGCTTGCCTCAATGTCAACACATCTTTCACTTGACATGCGTGGACAAGTGGCTTCTCAGTCATGGTTCATGCCCGGTTTGCAGACAAGACGTGTGA 648 0.4599 METRDQIEEHGPFPGIPKLMLCAISGVLTGSCAIAGAFTGAVAGALAGRASDSGILRGAVLGAVAGAVLSIEMLEASRAYWCLEQTGSRGTSAMADFIEELHGRFVDEQFSRSIITAHHWQRVSIAAGDFEEINNVQELVSCQGLSYDLLDKLPHHLIKKEMKTELNLFCTICLQDIETGEIARSLPQCQHIFHLTCVDKWLLSHGSCPVCRQDV* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00473 215 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Pte3g00473 215 SMART ring_2 170 211 IPR001841 -
Pte3g00473 215 ProSiteProfiles Zinc finger RING-type profile. 170 212 IPR001841 -
Pte3g00473 215 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 215 IPR044523 -
Pte3g00473 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 215 IPR013083 -
Pte3g00473 215 SUPERFAMILY RING/U-box 152 215 - -
Pte3g00473 215 Pfam Ring finger domain 170 212 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00473 Pte-Chr3 3801673 3803596 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00473 16 215 C3H Transcription Factor Family AT1G74410 58.706 9.29e-73 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00473 - - rcu:8263402 257.684