Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00469 ATGGAAACCATTCTTGGGGTTTGTAAGGAGGAAGAACAGTTGGATTTACCCCCTGGATTTCGGTTTCACCCTACTGATGAGGAGCTCATAACTCATTACCTGCAACACAAGGTTATCAATAGCAACTTCTCTTGCAGAGCCATTGGAGATGTGGACTTGAACAAGTCTGAGCCTTGGGATTTACCATGGAAAGCAAAAATGGGAGAAAAGGAATGGTACTTTTTCTGTGTCAGAGACAGAAAGTACCCAACTGGATTGCGAACCAACAGAGCCACTGAAGCTGGATACTGGAAAGCCACAGGGAAAGACAAGGAGATCTACAAAGGGAAATCTCTGGTTGGGATGAAGAAGACCTTAGTTTTTTACAGAGGAAGAGCACCAAAAGGAGTCAAATCTAACTGGGTGATGCACGAGTATAGATTAGAGGGCAACCTCTCTGTTGAAAACCTTCCCAAAACTGCAAATAACGAGTGGGTGATATGCAGAGTATTTCAAAAGACGCCAGGGGGGAAGAAAACTCATATTTCTGGTATAATGAGATTGGGTTCTTATGGAAATGATTTGAGTACTTCTCCTTTTCCACCATTGACAGATTCTTCTCCTTCAACTGCTAAGACCAAGCCCGTAGCTGAATCAGCCTACGTGCCCTGCTTCTCCAACTCAATGACTGTCCAAAGAAACCAATTAGGAGGGATTGGGATGGCTAATTCCTTCCATAACCCTCGTCTACAGGTTCCTCCAAATCTTTCAGAGACTCTTCCAAGTGTTCAGCTTTCTAATTCACAGTATACTACTACTCAAGCCATTCAAGTCCCGGCTAGCTTTTCACTGTCTGGTTCTGTCTACGATGTGCAAGAGGATTCATTGCTTAGGGCTTTTCTTCAGAGTCATGGAACCAACGTAAGGAACGCACCTTTGAAAACGGAGAGAGATATGATAAGCCCCTCTCAAGAGACAGGCCTGACGACAACTGATATGAACCCTGAAATCTCTTCAGTAGTATCCAACTTTCAAATGGGCAGGAGGCCATTTGATAATCAGGGAGCGCCACCTGTTTCAGCAGATCTTGATAGCTGGTGGAATTGTTGA 1089 0.4426 METILGVCKEEEQLDLPPGFRFHPTDEELITHYLQHKVINSNFSCRAIGDVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIYKGKSLVGMKKTLVFYRGRAPKGVKSNWVMHEYRLEGNLSVENLPKTANNEWVICRVFQKTPGGKKTHISGIMRLGSYGNDLSTSPFPPLTDSSPSTAKTKPVAESAYVPCFSNSMTVQRNQLGGIGMANSFHNPRLQVPPNLSETLPSVQLSNSQYTTTQAIQVPASFSLSGSVYDVQEDSLLRAFLQSHGTNVRNAPLKTERDMISPSQETGLTTTDMNPEISSVVSNFQMGRRPFDNQGAPPVSADLDSWWNC* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00469 362 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 259 - -
Pte3g00469 362 FunFam NAC domain-containing protein 100-like 25 170 - -
Pte3g00469 362 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Pte3g00469 362 SUPERFAMILY NAC domain 13 166 IPR036093 GO:0003677|GO:0006355
Pte3g00469 362 Gene3D NAC domain 25 169 IPR036093 GO:0003677|GO:0006355
Pte3g00469 362 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00469 Pte-Chr3 3779608 3782130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00469 14 361 NAC Transcription Factor Family AT5G07680 57.627 2.28e-130 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pte3g00469 NAM 3.7e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00469 - - qsa:O6P43_022865 512.301