Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00464 ATGGGCATTCTCTGGTTTCTCTTAGTGGGGCTGCTCTCTATTGTATTGTCTGCTCAAGGGTATGGTAGTGGCTGGACTGATGCCCATGCTACTTTCTATGGTGGGGGTGATGCATCTGGTACAATGGGTGGGGCTTGCGGATATGGAAATTTGTACAGTCAGGGATATGGGACCAATACAGCTGCCTTGAGTACAGCATTGTTCAACAGTGGTTTGAGCTGTGGAGCTTGTTTTGAGATTAGGTGTGCTAATGAGCAGAAATGGTGTCTGTCAGGCTCAATTATGGTCACTGCCACTAACTTCTGCCCCCCAAACCATGCGCTCCCTAGCAATGCAGGTGGCTGGTGCAACCCTCCCCTTCACCATTTTGATCTCTCTCAGCCCGTCTTCCAACGGATCGCACAGTACAGAGCTGGGATTGTACCTGTCTCATACCGAAGGGTCCCATGCCGAAAGAAAGGAGGCATCCGATTCACAATCAATGGTCATTCTTACTTCAATTTGGTTCTTATCTTCAACGTTGGAGGTGCAGGAGATGTTCATGCAGTTTCCATCAAAGGGTCAAGGACTGATTGGTTGCCAATGTCAAGGAACTGGGGTCAGAACTGGCAAAGCAATGCTTACCTCGATGGACAAAGCCTTTCATTCAAGGTTACCACCAGTGATGGCCGTAGTGTGGTGTCCAACAATGTTGCTCCTGCTGCCTGGTCCTTTGGCCAGACTTTCAACGGCCAACAATTCCCATGA 747 0.4926 MGILWFLLVGLLSIVLSAQGYGSGWTDAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNSGLSCGACFEIRCANEQKWCLSGSIMVTATNFCPPNHALPSNAGGWCNPPLHHFDLSQPVFQRIAQYRAGIVPVSYRRVPCRKKGGIRFTINGHSYFNLVLIFNVGGAGDVHAVSIKGSRTDWLPMSRNWGQNWQSNAYLDGQSLSFKVTTSDGRSVVSNNVAPAAWSFGQTFNGQQFP* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00464 248 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 165 244 IPR007117 -
Pte3g00464 248 Pfam Lytic transglycolase 60 145 IPR009009 -
Pte3g00464 248 SUPERFAMILY Barwin-like endoglucanases 24 173 IPR036908 -
Pte3g00464 248 PRINTS Expansin signature 55 69 IPR002963 GO:0009664
Pte3g00464 248 PRINTS Expansin signature 130 143 IPR002963 GO:0009664
Pte3g00464 248 PRINTS Expansin signature 154 166 IPR002963 GO:0009664
Pte3g00464 248 PRINTS Expansin signature 113 130 IPR002963 GO:0009664
Pte3g00464 248 PRINTS Expansin signature 166 187 IPR002963 GO:0009664
Pte3g00464 248 PRINTS Expansin signature 82 93 IPR002963 GO:0009664
Pte3g00464 248 PRINTS Expansin signature 201 222 IPR002963 GO:0009664
Pte3g00464 248 PRINTS Expansin signature 94 104 IPR002963 GO:0009664
Pte3g00464 248 PRINTS Expansin signature 230 246 IPR002963 GO:0009664
Pte3g00464 248 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Pte3g00464 248 PRINTS Expansin/Lol pI family signature 42 60 IPR007118 GO:0005576
Pte3g00464 248 PRINTS Expansin/Lol pI family signature 138 154 IPR007118 GO:0005576
Pte3g00464 248 PRINTS Expansin/Lol pI family signature 192 206 IPR007118 GO:0005576
Pte3g00464 248 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Pte3g00464 248 PRINTS Expansin/Lol pI family signature 64 82 IPR007118 GO:0005576
Pte3g00464 248 CDD DPBB_EXPA_N 24 150 - -
Pte3g00464 248 Gene3D - 154 247 IPR036749 -
Pte3g00464 248 SMART dpbb_1 60 145 IPR007112 -
Pte3g00464 248 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 43 155 IPR007112 -
Pte3g00464 248 Pfam Expansin C-terminal domain 156 233 IPR007117 -
Pte3g00464 248 PANTHER EXPANSIN-A15 9 247 IPR002963 GO:0009664
Pte3g00464 248 FunFam Expansin 15 151 - -
Pte3g00464 248 SUPERFAMILY PHL pollen allergen 152 243 IPR036749 -
Pte3g00464 248 FunFam Expansin 155 247 - -
Pte3g00464 248 Gene3D - 13 151 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00464 Pte-Chr3 3733971 3735510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00464 1 247 Expansin Gene Family AT2G03090 78.543 8.21e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00464 - K20628 nnu:104598100 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00464 3 3733971 3735510 Pte1g02329 1 43936945 43939961 RCT
Pte3g00464 3 3733971 3735510 Pte3g00464 3 3733971 3735510 RCT