Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00461 ATGGGAAGGGTGAAACTAAAGATAAAAAGGTTAGAAAGCACAAGTAATCGGCAAGTGACTTATTCTAAACGGAGAAGTGGAATACTGAAGAAAGCAAAGGAATTGTCTATACTATGCGACATAGATATTATCCTACTCATGTTTTCTCCGACAGGAAGGCCTACCTTATTACAAGGAGACCGCAGGTACTATAACAACATTGAAGATGTCGTTGCCAGATTTGCTCAGCTAAGTCCACAAGAAAGGGCAAAAAGGAAACTGGAGAGTCTTGAAGCACTGAGAAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGGTCAAGGTATGTTATCTTTGACTTAACTCATCAAGTAAGGATACTGCAAACTCAAATTACCGAAGTACACAGGAGAATGAGCAACTGGAGTAACGTAGATAAGATCAACAATGTAGAACATCTAAGGCAGATGGAAGTCTTGCTAACGGAATCTATCAATGGTGTACGCCTACAAAAGGAAAATTTGGGAAAACGGCAGCTGATTTCACTTGAGAGTTCTAGCCAGCAATTGCAGGATGGAATGCCTATACCTTTGGTGATGGGAGGGCTGCAAGAAGGCCAACAGCTGTCTTGGCTCTTGAATAATGATTGTCAACAAATTATATTACCCAGTGAGCCAAAATTCCTCTCATATGGTAATACTCCCAATAAAGCTTCAGAGTGCCCAGCGGACGTGTCACTGCAAGGTTATTCTGATTATTTTGGCAATGGTAAACAACTGGACGTTGGGAACTCAACCCAATCCCAAATGGTACAAGGAGGGGACACCTTGAATGAGTTGAACAGAAATGGTTGCTTAAGCCTTCAACTTGGGGAGCAGTTTGCATACTCTCCTTTCTCTGGTCCGGCTATGCCAGATGATAAATTAAAAATTCAGATGGAGATGGACATGAAACCCCAAATGGAAATGAACTTGAAACCAGAACATGTGACCTATCAAGTGAACGATAATAGTTTTGATCTCCCTAGATCCATCTATGAAAATGGTCATTCTTGGAGTAACACAGCAGGGGCTTGTGGTGTTGCCGCGTATGACGAGAACTCCTTCAATGGAGTGAGTATACCTTTATAA 1125 0.4124 MGRVKLKIKRLESTSNRQVTYSKRRSGILKKAKELSILCDIDIILLMFSPTGRPTLLQGDRRYYNNIEDVVARFAQLSPQERAKRKLESLEALRKTFKKLDHDVKIQDFLGSRYVIFDLTHQVRILQTQITEVHRRMSNWSNVDKINNVEHLRQMEVLLTESINGVRLQKENLGKRQLISLESSSQQLQDGMPIPLVMGGLQEGQQLSWLLNNDCQQIILPSEPKFLSYGNTPNKASECPADVSLQGYSDYFGNGKQLDVGNSTQSQMVQGGDTLNELNRNGCLSLQLGEQFAYSPFSGPAMPDDKLKIQMEMDMKPQMEMNLKPEHVTYQVNDNSFDLPRSIYENGHSWSNTAGACGVAAYDENSFNGVSIPL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00461 374 FunFam Agamous-like MADS-box protein AGL30 14 99 - -
Pte3g00461 374 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Pte3g00461 374 CDD MADS 2 54 - -
Pte3g00461 374 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Pte3g00461 374 Coils Coil 80 100 - -
Pte3g00461 374 SUPERFAMILY SRF-like 2 98 IPR036879 GO:0003677|GO:0046983
Pte3g00461 374 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte3g00461 374 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte3g00461 374 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte3g00461 374 Gene3D - 14 99 IPR036879 GO:0003677|GO:0046983
Pte3g00461 374 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte3g00461 374 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00461 Pte-Chr3 3724209 3727975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00461 1 256 Type I MADS-box Gene Family AT2G03060 48.302 1.53e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pte3g00461 SRF-TF 6.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00461 - - qsa:O6P43_022860 490.345