Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00459 ATGCCGGAAAGCAAAGACCCGGCAATCACGCTTTTCGGAATGAAGATTCCTTTACCGGCTGACAGTGAGACGCAGCCAATCCGACTGGATGACTCCACTCCTTATGCTATCCAAGAAAAGCAGGGTGAGAGAGATGAAGAAGCAGGGGGAACACCAGACAAGGAATCCCCATCAGGAGAAGCAGCTGATACTGCTATGGAGCAAAAAGATGATCCGTCAGATAATTCTAATGATGACAACAATTCAAAACCATTGACAGAGGCTGATCCAAACCCTAGAACAAATGAACAAACTGCAGAAGGAGAAAAATCTTCCAAGACAAAGAAGGAGCAGAATGATGCGGTCAACTCACTAGAGAAACCCCTGAAGAAGCCAGATAACATACTTCCGTGTCCACGATGCAATAGTATGGATACAAAGTTCTGTTACTACAACAACTACAATGTCAATCAACCTCGACATTTCTGCAAGGCCTGTCAAAGGTATTGGACTGCAGGTGGTACTATGAGAAATGTACCAGTAGGAGCTGGAAGAAGGAAGAACAAATATTCTGCCTCACACTATCGTCACATAACCATTTCTGAGGCTCTTCAAGCAGCTAGGATTGATTCCTCCGATGGAACACACCTGCCTTCACTAAAAAATAATGTTAGAGTCTTGAACTTTGGCTTAGATGCGCCTATTTGTGATTCCATGGCTACTATCCTCAATCTTACAGATAAGAAGGTTTCTAATGATACCAGAAATGGATTTTACAGCATTGGAGAACGGAGCATTCCAGCTCCTTGTAAATCTAAGGAAACTGGTGATGACTGCTCTAGTACTTCTTCTGTTACAGCGACAACTTCAGCGGAAGATGTAGGTAATAGGCACTCATTACAGTCAACGTTTCCAGCTATTAATGGATTCCCTGCTCAGATTCCATGTCTTCCAGGTGTTCCTCCATGGCCTTATGCTTGGAGTTCGACAGCCCCACCCCCTGCTTTCTGTCCTGCAGGATTTCCTCTTCCATTTTATCCAGCACCATTTTCGAACTGTATTGTCCCTTGCAATTGGAGCATTCCCTGGTTCTCACCACAGCCCTCTTCCCCGAGCCAAATGTCACCTAGTTCTGGTCCAAATTCTCCTACATTAGGAAAACATTCAAGGGACGGGGACATGCTTACATCAGACATTTTGGAGCACGAAGAGTCTCTGAAACAGAAAAATGGATGTGTTCTAGTTCCAAAAACCTTGAGAATAGATGACCCATGTGAAGCTGCTAAGAGCTCTATATGGGCAACGCTTGGTATTAAAAATGAAGCAGTGAGTGGAGGAGGCATGTTTAAGGCTTTCCAACCAAAGAACGATGAAAAGAACCATATCGTAGAAGCCTCTCCGGTGCTCAGGACTAACCCTGCAGCCTTGTCAAGATCCCTCGACTTTCATGAGAGGTCCTAA 1440 0.4465 MPESKDPAITLFGMKIPLPADSETQPIRLDDSTPYAIQEKQGERDEEAGGTPDKESPSGEAADTAMEQKDDPSDNSNDDNNSKPLTEADPNPRTNEQTAEGEKSSKTKKEQNDAVNSLEKPLKKPDNILPCPRCNSMDTKFCYYNNYNVNQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKYSASHYRHITISEALQAARIDSSDGTHLPSLKNNVRVLNFGLDAPICDSMATILNLTDKKVSNDTRNGFYSIGERSIPAPCKSKETGDDCSSTSSVTATTSAEDVGNRHSLQSTFPAINGFPAQIPCLPGVPPWPYAWSSTAPPPAFCPAGFPLPFYPAPFSNCIVPCNWSIPWFSPQPSSPSQMSPSSGPNSPTLGKHSRDGDMLTSDILEHEESLKQKNGCVLVPKTLRIDDPCEAAKSSIWATLGIKNEAVSGGGMFKAFQPKNDEKNHIVEASPVLRTNPAALSRSLDFHERS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00459 479 MobiDBLite consensus disorder prediction 99 120 - -
Pte3g00459 479 Pfam Dof domain, zinc finger 126 182 IPR003851 GO:0003677|GO:0006355
Pte3g00459 479 MobiDBLite consensus disorder prediction 1 127 - -
Pte3g00459 479 PANTHER CYCLIC DOF FACTOR 2 4 479 IPR045174 GO:0003700|GO:0006355
Pte3g00459 479 MobiDBLite consensus disorder prediction 37 53 - -
Pte3g00459 479 ProSitePatterns Zinc finger Dof-type signature. 131 167 IPR003851 GO:0003677|GO:0006355
Pte3g00459 479 MobiDBLite consensus disorder prediction 268 287 - -
Pte3g00459 479 MobiDBLite consensus disorder prediction 265 287 - -
Pte3g00459 479 MobiDBLite consensus disorder prediction 361 378 - -
Pte3g00459 479 MobiDBLite consensus disorder prediction 361 385 - -
Pte3g00459 479 MobiDBLite consensus disorder prediction 78 98 - -
Pte3g00459 479 ProSiteProfiles Zinc finger Dof-type profile. 129 183 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00459 Pte-Chr3 3713640 3716648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00459 1 478 C2C2-Dof Transcription Factor Family AT3G47500 49.388 1.72e-123 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte3g00459 zf-Dof 4.4e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00459 - - qsa:O6P43_022858 603.594
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00459 3 3713640 3716648 Pte1g01953 1 40839789 40841904 RCT
Pte14g00108 14 4292096 4294885 Pte3g00459 3 3713640 3716648 RCT
Pte3g00459 3 3713640 3716648 Pte3g00459 3 3713640 3716648 RCT