Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00454 ATGGAGAATCATCTGCTGCTTGATACTTCCTCTTTTCGTTACCACATTCCTTCGTACGATCTCAGTGGAACTGCGAGCGGTTTTTATGAGGAGGATTGGCAACATGTATTGCCAGCAGGACAGAGCTTTTCCGATGGCATCTCTTTATTTGAAAGCTTCCCACATGACCCGTTATATGCATCTTTGTCCATTGAGCCATCACCATCAAAAAGAAAGCAAGAGGACGTTAGGTTCTGTGGAGTGAACAATGATTTCGCGTTATGGAACGAAATAAACTTTTCTGGATTCATTAATCAACACAGTTTATGTGTAGACTGTAAGGAAGCAGGAATGCAGAAGTTGCCAGTGAAGGATTTAGACAGCAAGAACAAGAGATGCTGGGACGAGAGGACTCGCAGTGCTGAGATGTTGTCCAAGAAAATGATATCACAATACTTCTATATGCCAATCATGCTAGCTGCAAAGGAGTTGAACGTTGGCCTGACACTCCTGAAGAAAAGGTGCAGGCAATTGGGTATTAGAAGGTGGCCTCACAGAAAACTGACGAGTCTTCAGACGCTAATACGAAATGTGCAGAAAATGGAAAACGAAGATAAAGACAAACTGAGAAATGCTATTGAGATACTTGAGAGAGAAAAGAAGCTTTTGGAACAAGTCCCAGATTTGCAACTAGAGGATCACACTAAGAGGCTAAGACAAGCTTGTTTCAAGGCCAACTACAAGAAGAGAAGACTTGTGGCCATGGAGCAGACAGAATATAAACGTCCCTGCAGCAGTACTAGGAGTGCTGCAACTTCCAGCATGGCTAGTTATGAGACAAGCCAAGAAATTGAAGACGATGTCGATGAGGAAATGAAATGTCTTTTGTATTCTCCTCTTTCAGAGAGCTTAGGAGGGCTTTAG 903 0.4286 MENHLLLDTSSFRYHIPSYDLSGTASGFYEEDWQHVLPAGQSFSDGISLFESFPHDPLYASLSIEPSPSKRKQEDVRFCGVNNDFALWNEINFSGFINQHSLCVDCKEAGMQKLPVKDLDSKNKRCWDERTRSAEMLSKKMISQYFYMPIMLAAKELNVGLTLLKKRCRQLGIRRWPHRKLTSLQTLIRNVQKMENEDKDKLRNAIEILEREKKLLEQVPDLQLEDHTKRLRQACFKANYKKRRLVAMEQTEYKRPCSSTRSAATSSMASYETSQEIEDDVDEEMKCLLYSPLSESLGGL* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00454 300 Coils Coil 184 219 - -
Pte3g00454 300 Pfam RWP-RK domain 137 184 IPR003035 -
Pte3g00454 300 ProSiteProfiles RWP-RK domain profile. 121 205 IPR003035 -
Pte3g00454 300 PANTHER PROTEIN RKD4 80 245 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00454 Pte-Chr3 3697659 3698934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00454 124 248 AtRKD Transcription Factor Family AT1G18790 62.121 1.75e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Pte3g00454 RWP-RK 1.7e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00454 - - qsa:O6P43_001960 244.202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00454 3 3697659 3698934 Pte3g00454 3 3697659 3698934 RCT