Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00449 ATGGGCAGGCCACCTTGCTGTGATAAAACCGGCGTTAAGAAAGGTCCATGGACGCCAGAGGAAGACATCGTTTTGGTCTCATACATTCAAGAACAGGGAGCTGGCAACTGGAGAAATGTTCCCAGTAAAACAGTAAAAATGGTAAGGACGAGATGGGCTGCCATAGCCTCCTACCTTCCAGAGCGAACCGACAACGACATCAAGAATTATTGGAACACCCATCTGAAGAAGAAATTGAAGATGAACCAGACAGGGATCCAGAGTCATGACCAAGGTGGCTTCTCATCTTCACAGCCGAAAGATCAATGGGAGAGAAGGCTTCAAACAGATATCCACATGGCCAAGCGAGCACTGCGTGAGGCTTTGTCCCTTGACAAGGAAAGTGATCGAGTACTGCCAGCTGACATCAACAGTGGACCCTACCAACCATCCACCTCCTCCTCGTCATCACCGTCATATGCTTCTAGTGCTGAAAACATAGCACGATTGCTTGAAAACTGGGTGAAGAAACCTTCAAAACCAGTGCTTGCTCAAAATTCCTCAGCTATATTTGACACTTGTGGTTCAGCAAGTTCCAGCGAAGGCACACTGACCGCTACCTGCACGACCGATGCCTTAAACTCACAATGGAGCTTCAACCCTTCTCCCAACCCTGATGTGTCTCAATCAGGATCGGCAGATGAGACCTCCATGATGAGGCCTGATGCTAGCCTCTGGCAACATGAAAGTAAACCAAATTTGGAGGCAACTGCAACTGCCCATTTCACATTGATAGAGAAATGGCTTTTTGATGATAGCACAATTCAACTTCAAGGTCACGAAGATCTGGTCAACGTGTCCCTGCAAGAAACTTCAGTAGGGCTGTTCTAG 870 0.477 MGRPPCCDKTGVKKGPWTPEEDIVLVSYIQEQGAGNWRNVPSKTVKMVRTRWAAIASYLPERTDNDIKNYWNTHLKKKLKMNQTGIQSHDQGGFSSSQPKDQWERRLQTDIHMAKRALREALSLDKESDRVLPADINSGPYQPSTSSSSSPSYASSAENIARLLENWVKKPSKPVLAQNSSAIFDTCGSASSSEGTLTATCTTDALNSQWSFNPSPNPDVSQSGSADETSMMRPDASLWQHESKPNLEATATAHFTLIEKWLFDDSTIQLQGHEDLVNVSLQETSVGLF* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00449 289 ProSiteProfiles Myb-like domain profile. 9 75 IPR001005 -
Pte3g00449 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 79 IPR017930 -
Pte3g00449 289 MobiDBLite consensus disorder prediction 138 153 - -
Pte3g00449 289 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 50 207 - -
Pte3g00449 289 MobiDBLite consensus disorder prediction 83 102 - -
Pte3g00449 289 MobiDBLite consensus disorder prediction 129 153 - -
Pte3g00449 289 CDD SANT 16 75 IPR001005 -
Pte3g00449 289 Pfam Myb-like DNA-binding domain 14 52 IPR001005 -
Pte3g00449 289 SUPERFAMILY Homeodomain-like 11 71 IPR009057 -
Pte3g00449 289 Gene3D - 12 80 - -
Pte3g00449 289 SMART sant 13 77 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00449 Pte-Chr3 3670851 3672580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00449 1 272 MYB Transcription Factor Family AT5G62470 40.056 7.60e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte3g00449 Myb_DNA-binding 6.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00449 K09422 - qsa:O6P43_022846 302.753