Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00420 ATGGCTTTCCTGAGTAAAGTTGGGAATGTCGTAAGGCAGACTGTGAGCAGGCAGTTAAACTCAGAACTGGGTTTTACTCCTTCCATTTACCAGTCAATAAGATGCATGTCATCTTCTCCTAGCAGCAAACTTTTTATTGGAGGCTTATCATTTAGTACTGATGAACCATCTTTGAGGCAAGAGTTTGCAAAATATGGTGAAATTGTGGATGCAAGAATAATACACGATCGGGAGACAGGTAGATCTAGAGGATTTGGTTTTGTTACTTTCACTAATGTTGAGGAGGCATCAAGTGCCATTCAGGCTCTAGATGGAAAGGAACTTCATGGCCGGCTAGTGAGAGTAAATTATGCCAATGAAAAACCTCGTACATTTGGGGGAGGATACAACAATGCGCAATATGGGAGTGGCGGCGGTGGCTTTGGTGGTGGTGGATATGGGGGTGCTGGTGGAGGTAGCAGCTTTAGTGGTGGATATGGTAATGCCCCATATAGTGGTGCTGGTGGAGGTGGCTATAATCCTAGCAATTATGAAGGTCCTGCAGCTGGAGGCAATTACGCAAGTGGAGTTGACTATAACACTAACAATTATGGTGGCAACAGCTACGGAATTGGGAGCGCTGGTGGTAGCTACGGTGGAAGTGATACCGGTTATGGTAATGATGGCAGTTTTGGTGTTGCTGGTGGTGTTGGAGGGAGTGATAGCCTTGGAAATGCTGGAGGTTTTGGTGGCAGCGATAACTTCAGGAATGACAGAAGCACCAGTGTGGGTTATGATGCTAGCGGAGAAGTTGCCGGAAGTAACTTTGCTACTGGAGGATATGATGGCAACAATGGAACGGCATATGGCAGCAATCTTAACCATGCTGGAGATGACGCTAATTCATTGAAAGGAACTTACGGTGAAGATGACAACGAGAACAACGATTTTGCTAATAGGGCGTGA 945 0.4582 MAFLSKVGNVVRQTVSRQLNSELGFTPSIYQSIRCMSSSPSSKLFIGGLSFSTDEPSLRQEFAKYGEIVDARIIHDRETGRSRGFGFVTFTNVEEASSAIQALDGKELHGRLVRVNYANEKPRTFGGGYNNAQYGSGGGGFGGGGYGGAGGGSSFSGGYGNAPYSGAGGGGYNPSNYEGPAAGGNYASGVDYNTNNYGGNSYGIGSAGGSYGGSDTGYGNDGSFGVAGGVGGSDSLGNAGGFGGSDNFRNDRSTSVGYDASGEVAGSNFATGGYDGNNGTAYGSNLNHAGDDANSLKGTYGEDDNENNDFANRA* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00420 314 Gene3D - 34 153 IPR012677 -
Pte3g00420 314 SMART rrm1_1 43 116 IPR000504 GO:0003723
Pte3g00420 314 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 30 212 - -
Pte3g00420 314 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 113 IPR000504 GO:0003723
Pte3g00420 314 MobiDBLite consensus disorder prediction 297 314 - -
Pte3g00420 314 MobiDBLite consensus disorder prediction 280 314 - -
Pte3g00420 314 SUPERFAMILY RNA-binding domain, RBD 38 152 IPR035979 GO:0003676
Pte3g00420 314 CDD RRM2_NsCP33_like 43 118 - -
Pte3g00420 314 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00420 Pte-Chr3 3457232 3459803 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00420 42 122 Eukaryotic Initiation Factors Gene Family AT4G34110 37.037 9.29e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00420 K12741 - qsa:O6P43_022912 214.927