Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00412 ATGGAGTCCGCGAGAAAAGTGAAGGATGTCTCACCCCACGAGTTCGTCAAAGGTTACGCCGCTCACCTTAAACGTTCAGGCAAGATTGAGCTTCCGGATTGGGCTGATATTGTAAAGACTGGGAAATTGAAGGAGCTTGCACCTTATGATCCCGATTGGTACTATACTAGAGCTGCATCCATGGCAAGGAAGATTTATTTGAGGGGTGGGCTTGGTGTTGGTGCATTCCGAAGGATTTACGGCGGGAGCAAGAGAAACGGCAGTCGACCTCCTCATTTCTGTAAGAGCAGTGGCTCAATTGCCCGGCACATACTCCAACAATTGCAGAAGATGAATATCGTCGAGATTGACGTGAAGGGTGGCAGAAGAATTACACCCAGTGGCCAGAGGGATCTTGATCAAGTCGCTGGAAGGATAGCTGTTGTTGCTCCTTGA 435 0.492 MESARKVKDVSPHEFVKGYAAHLKRSGKIELPDWADIVKTGKLKELAPYDPDWYYTRAASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGSIARHILQQLQKMNIVEIDVKGGRRITPSGQRDLDQVAGRIAVVAP* 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00412 144 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
Pte3g00412 144 PANTHER 40S RIBOSOMAL PROTEIN S19 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Pte3g00412 144 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
Pte3g00412 144 FunFam 40S ribosomal protein S19 2 143 - -
Pte3g00412 144 Gene3D - 1 143 IPR036388 -
Pte3g00412 144 Pfam Ribosomal protein S19e 6 139 IPR001266 GO:0003735|GO:0005840|GO:0006412
Pte3g00412 144 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00412 Pte-Chr3 3397649 3399153 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00412 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 87.234 9.12e-92 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00412 K02966 - pop:18105726 267.314