Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte3g00408 | ATGGAAGAAGATCACGAACCAAAACATGTGTGTAAGTATTGCAGTAAGAGTTTTCGGTGTGACAGATCCTTAGGTGGCCACATGAGGTCTCATGCCATCAACAATTCAGCTAAGAAGGATGAGAAGCTTGAATTCAAGAAGTTAAGCTCTGTCGACAATGGTTATAGATTGAGAGAGAACCCAAAGAAAACTTGGAGAGTTGCTGCTATAAGCGTTGAAGTGTTACTTCAAGACAAGTCTTGCAAAGAGTGTGGCAAAGGATTTCATTCCTGGAAAGCTTTATTTGGTCACATGAAATGTCATTCAGAGAAACAGAGAGTTGCTAACAACTTGGAAGAACATCAAGATTCATGGACAGATGAGAATACGAACCAGAAGCTTGTAATGGATCGCCAATCCGACAATGATCTTTCTGCTCCAAACCGTAGAAAAAGATCAGAAAGAAGAACAAGGTGTGTAACAAATGCAACATCAGCTTTCTCATTAATCGATCCTACTTCTTCTGTTTCTGATAGTAAGCATGAACAAGAAGAAGTTGCTTTGAGCTTGATGATGCTTTCTAGGGACGTGGGTTCATGGGGTCCTCTGAATTCTGTCACGGAGTCTTCTGAAAATGATTCCATGTACTCACAAGCTCAACCTAATCTTGTCAACCAAATCGAGGACAGGGCAGCCACCTCCGACTTAAGAAAACCGACAGAACAACAAGGTGAGAAGGGGAAGCTTAGAATCTCGGATTTTGTAGAGAACGAGCAGGGACATTACTCAGAGACTTTTACCTCTGAATTTTCAAGAACTATCTCAAAAATGAAAAGAACCAGAGTCTCAGTTAATGAGTTTCTTGATAGATTAAAGAACTCACACTGCGGTGATCAATATCAACCTCAAGAAACTCAGCATAAATTAGGTAATAAGTCGATCAAGGAAATTCAGTTAGCTAAAATCAGGTCGTCTTGTAAGGGGTACACTTCAATCAAGAGAAAGTTCAGTGACTTGTACGATTGTAAAGTACGAAAGTCAAATCCCTTGAAACAAGTAGCAACAAAGGTTTCAGGAGCTGAATTGTGCAGTAATTCTCATATAGGAAGCAAGTTTGAGTGTACTACTTGTAACAAGGTGTTCTCTTCTTACCAAGCTCTGGGTGGCCACAGAGCTAGTCATAGAAGAACTGTAGCCTGCTCTGTTATCGAGAGCAGTGAAAAGAGCACTGAGACAGATCTTTCAACAGATCTTTCACCAGAGGAAACAGATTATAATACTATCATCGAATCAGATAAGAAAGAATATCAAGAACACACGAGTGTCAGAAGGGTCAGGAAGAACAAGGGGCATGAATGTTCCATTTGCTCCAAAGTTTTCACATCAGGCCAAGCACTGGGTGGCCATAAGAGGTCCCATTTGATCGCTTACACTGACAGTAGAAACTGCGAAACATTAACAATTCAGAAACCCGTGTCTGAAATGAGAGACTTTCTTGATCTCAATCTTCCTGCTTCTGCTGATGAAGAGAGCAACAACCATGTCTCATCTTACAGTCCACCATGGTGGTTATCAACCAGCCACAAGCATGAGGAAATTGCAGAAGTGGTGTCTAGCTGA | 1599 | 0.4109 | MEEDHEPKHVCKYCSKSFRCDRSLGGHMRSHAINNSAKKDEKLEFKKLSSVDNGYRLRENPKKTWRVAAISVEVLLQDKSCKECGKGFHSWKALFGHMKCHSEKQRVANNLEEHQDSWTDENTNQKLVMDRQSDNDLSAPNRRKRSERRTRCVTNATSAFSLIDPTSSVSDSKHEQEEVALSLMMLSRDVGSWGPLNSVTESSENDSMYSQAQPNLVNQIEDRAATSDLRKPTEQQGEKGKLRISDFVENEQGHYSETFTSEFSRTISKMKRTRVSVNEFLDRLKNSHCGDQYQPQETQHKLGNKSIKEIQLAKIRSSCKGYTSIKRKFSDLYDCKVRKSNPLKQVATKVSGAELCSNSHIGSKFECTTCNKVFSSYQALGGHRASHRRTVACSVIESSEKSTETDLSTDLSPEETDYNTIIESDKKEYQEHTSVRRVRKNKGHECSICSKVFTSGQALGGHKRSHLIAYTDSRNCETLTIQKPVSEMRDFLDLNLPASADEESNNHVSSYSPPWWLSTSHKHEEIAEVVSS* | 533 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte3g00408 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 6 | 34 | IPR036236 | - | |
| Pte3g00408 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 80 | 106 | IPR036236 | - | |
| Pte3g00408 | 532 | Gene3D | Classic Zinc Finger | 362 | 466 | - | - | |
| Pte3g00408 | 532 | MobiDBLite | consensus disorder prediction | 114 | 150 | - | - | |
| Pte3g00408 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 367 | 387 | IPR013087 | - | |
| Pte3g00408 | 532 | SUPERFAMILY | beta-beta-alpha zinc fingers | 365 | 466 | IPR036236 | - | |
| Pte3g00408 | 532 | MobiDBLite | consensus disorder prediction | 121 | 135 | - | - | |
| Pte3g00408 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 11 | 31 | IPR013087 | - | |
| Pte3g00408 | 532 | SMART | c2h2final6 | 365 | 387 | IPR013087 | - | |
| Pte3g00408 | 532 | SMART | c2h2final6 | 79 | 101 | IPR013087 | - | |
| Pte3g00408 | 532 | SMART | c2h2final6 | 9 | 31 | IPR013087 | - | |
| Pte3g00408 | 532 | SMART | c2h2final6 | 444 | 466 | IPR013087 | - | |
| Pte3g00408 | 532 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 79 | 106 | IPR013087 | - | |
| Pte3g00408 | 532 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 9 | 36 | IPR013087 | - | |
| Pte3g00408 | 532 | Gene3D | Classic Zinc Finger | 1 | 106 | - | - | |
| Pte3g00408 | 532 | Pfam | C2H2-type zinc finger | 444 | 467 | - | - | |
| Pte3g00408 | 532 | Pfam | C2H2-type zinc finger | 81 | 103 | - | - | |
| Pte3g00408 | 532 | Pfam | C2H2-type zinc finger | 365 | 389 | - | - | |
| Pte3g00408 | 532 | Pfam | C2H2-type zinc finger | 9 | 31 | - | - | |
| Pte3g00408 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 81 | 101 | IPR013087 | - | |
| Pte3g00408 | 532 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 365 | 387 | IPR013087 | - | |
| Pte3g00408 | 532 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 444 | 466 | IPR013087 | - | |
| Pte3g00408 | 532 | PANTHER | C2H2-LIKE ZINC FINGER PROTEIN | 1 | 506 | - | - | |
| Pte3g00408 | 532 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 446 | 466 | IPR013087 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte3g00408 | Pte-Chr3 | 3365835 | 3367724 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte3g00408 | 394 | 502 | C2H2 Transcription Factor Family | AT1G26610 | 46.364 | 7.43e-17 | 81.3 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2H2 | Pte3g00408 | zf-C2H2_6 | 6.3e-13 | CL0361 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte3g00408 | - | - | jre:108990953 | 466.077 |