Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00404 ATGTTCTCGAAGACATGGAAGCCAAAGAAAACGCGAGTAATAGCAGGACCCACTATAACCAGCGACAATCCTGTGAGAAGGAAAGGAAACCATTTGGAGCAGAGAGATAAACTAGGATTGAATTCTGCACCTACGGAGAGATCGAAACAACTGACACTGCCTCCCGAACCCGAAACAGCACATGCATTTCAAAAAGTTGAGGTTGAAAAGGTGAAGCAAGATGACGCCCTTTCAGATTTAAGCAATATACTGGGAGAGCTTAAAGATATGGCTATGGACATGGGTTCTGAAATTGACAGGCAGAATAAAGCCATGGATGATCTTTATGTTGATGTCGACGAGTTGAATAGTCGTGTTAGAGGTGCTAATCAACGTGGTCTTCGCTTGCTCCGCAAATGA 399 0.4386 MFSKTWKPKKTRVIAGPTITSDNPVRRKGNHLEQRDKLGLNSAPTERSKQLTLPPEPETAHAFQKVEVEKVKQDDALSDLSNILGELKDMAMDMGSEIDRQNKAMDDLYVDVDELNSRVRGANQRGLRLLRK* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00404 132 FunFam SNAP25 homologous protein SNAP33 64 131 - -
Pte3g00404 132 CDD SNARE_Qc 72 125 - -
Pte3g00404 132 SMART tSNARE_6 62 129 IPR000727 -
Pte3g00404 132 PANTHER SYNAPTOSOMAL ASSOCIATED PROTEIN 1 132 - -
Pte3g00404 132 Coils Coil 98 125 - -
Pte3g00404 132 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 72 129 IPR000727 -
Pte3g00404 132 Gene3D - 64 130 - -
Pte3g00404 132 MobiDBLite consensus disorder prediction 1 57 - -
Pte3g00404 132 SUPERFAMILY SNARE fusion complex 64 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00404 Pte-Chr3 3355314 3356124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00404 58 125 SNARE and Associated Proteins AT3G09740 38.235 7.87e-07 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00404 K18211 - gmx:100809874 189.889