Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte3g00395 ATGGAGTCTGGGAGCTACGTTTCTGAAGGGAAGGGCTTTTTGTCTGATGACACAATCTCAACTCCTTGTACACTCGCAAGAATCAAGAGTCCTTTTTCGGGTTGGGAATTGAAAACGTCACTTAATCATGGTAATCACATGTTACTCCTGACTCAACAGAACCTTCAGAACCAAGGTTTTGGGGAACTGAGTTTTCCTGATTTGGTTGAAAAACAATTGCCTAGGAATGATCGTTTGAGCAGTGTGTTAAACAACAAGCTTGGCGATACTCATGGTGGAAGAGTAATCAGTTCAGTTATGACTGCTCCAAATACATTTTCTAATGGAGAGGACTCCAATTCAAAGCGCTCAAACTCCGGTGTTGAGTCTAATGGCCGTGACTCACTCATTGACTTGAAATTAGGAAGGTTTCTTGATCAGAGCGAGGGCAAAGATTTGCAATTTTCTAAAGTAGCCCCAGCCCCTATTTTGTCGTCTTCGTCATCATCAACTCCACCAAAGAGGGCAAGAGCATCAGGAGGACACTCACAGGCTGCCTTCTGTCAAGTATATGGCTGTAACAAGGTTCTGAGTGGTTCAAAAGACTACCACAAAAGGCATAAAGTTTGCGAGCTTCACTCCAAGACTGCCAAAGTCATTGTGAATGGCATTGAACAAAGATTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGGCATAATGAGCGTCGGCGAAAGCCTCAAGTGGTTGTTCATTCTGGAAGGCCAGGGAGGTTGCTCCAATCCTGCACTGACAACAGTTTTCAAGGGACCTCATTGACAACATCATTCATTTGCCAAGATCTCCTCCCCAATAGACTTGTGCATGCTGATAAGGTTGCTACATATGACATGTTCAGGCCCGTAAAAACTGAAAATGGAGTAAATTACAGCAATCTGTCGGCTATTCCAGTCTCAAATGGACAGCAACATTCCAGATCCTCTGTCCCATCTTTTAATTCTGAAAAGTTATTTTCCTTTCTCCAGGAAAACGATGCTTCTGCCACTGCTGGAAACATTTTCAATGCTAGTAACTGTCAATACACAGCTTCATTCGGAGTTCCAAATTCAGGGTCACTCTTCTTGTTCCATAACACTTCATTAGAAAGTGAAGACTTCAATGTTTTTGACACATCGAATGTCCATGTATTGTCGGGAATTTTAGACTCTGGTCGTGCTCTCTCTCTTCTGTCATCTCAATCGCAAAACAGTTCAGATCATTCTTCAGGAATTCCCATGGCCGGTTCCTTCTTCATGCAAAGCAGCCAGAGTCAGTATAGCATGAGTCAAGTTTCTGACAAGGTCACAGCAATTAGCTCACAAACTTCAGCAAGTGGGGTGATTAATAAGCTTCCTTCCACAGAAATGAATCTCGCTGACAGTCACCTTGACGTGGTGCTGATATCTGATTGTAGTGATGTTGTTAACTTCGACATAACAGATGGGATCCTCGAGAAAACAGATTTTGTGAATGCCAAAGATCATCTTACCTGCAAGGATGGAGCCACTATTGACTTACTTCAGCTGTCATCACAGCTACAGCGGGTTGAACGTCATAGACAAACCGTGCAAGTAAAGCAAGATAACTTGCAGCCTAAGGATCAGTTAAATAACTCCTAG 1683 0.4308 MESGSYVSEGKGFLSDDTISTPCTLARIKSPFSGWELKTSLNHGNHMLLLTQQNLQNQGFGELSFPDLVEKQLPRNDRLSSVLNNKLGDTHGGRVISSVMTAPNTFSNGEDSNSKRSNSGVESNGRDSLIDLKLGRFLDQSEGKDLQFSKVAPAPILSSSSSSTPPKRARASGGHSQAAFCQVYGCNKVLSGSKDYHKRHKVCELHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQVVVHSGRPGRLLQSCTDNSFQGTSLTTSFICQDLLPNRLVHADKVATYDMFRPVKTENGVNYSNLSAIPVSNGQQHSRSSVPSFNSEKLFSFLQENDASATAGNIFNASNCQYTASFGVPNSGSLFLFHNTSLESEDFNVFDTSNVHVLSGILDSGRALSLLSSQSQNSSDHSSGIPMAGSFFMQSSQSQYSMSQVSDKVTAISSQTSASGVINKLPSTEMNLADSHLDVVLISDCSDVVNFDITDGILEKTDFVNAKDHLTCKDGATIDLLQLSSQLQRVERHRQTVQVKQDNLQPKDQLNNS* 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte3g00395 560 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Pte3g00395 560 Gene3D - 171 242 IPR036893 GO:0003677|GO:0005634
Pte3g00395 560 MobiDBLite consensus disorder prediction 101 125 - -
Pte3g00395 560 MobiDBLite consensus disorder prediction 155 174 - -
Pte3g00395 560 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 112 466 IPR044817 GO:0003677
Pte3g00395 560 SUPERFAMILY SBT domain 179 257 IPR036893 GO:0003677|GO:0005634
Pte3g00395 560 MobiDBLite consensus disorder prediction 155 170 - -
Pte3g00395 560 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Pte3g00395 560 Pfam SBP domain 181 254 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte3g00395 Pte-Chr3 3278091 3281752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte3g00395 35 378 SBP-box Gene Family AT1G69170 37.110 2.26e-49 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pte3g00395 SBP 4.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte3g00395 - - qsa:O6P43_002246 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte3g00395 3 3278091 3281752 Pte2g02319 2 42896953 42899712 RCT
Pte3g00395 3 3278091 3281752 Pte3g00395 3 3278091 3281752 RCT